Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0022523

Physical Location & Seq

Genomic Coordinates Reverse (-)

26245035 .. 26246879

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG163300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTTCACGCCAGCCCTAGCGCCGGCTTCAACACGAATGGAGAGGCAGTCTCGCAGACCAAGGGGTTGGTCATTCCGGTTTCCCACGAAGGATTGAAATCTGGTGGTTGGTTTGTGAATGGGGAGCTGTTGGTTTCTCTCTTCCTCCCTTCTGCCCAAAAGGCTGAGCTGAGAGCAAGTGTGTTCGAGGCAATTGAAGAGGAGGACAAGGTCATTGAGAAAGATGAAGGCTTGCCTCCGGCGCTATTGGGTAGCTGCAACGATCGTGCTAAGCAGCTCCATGCTTCTCCTTCGGGAAGGTTGCTTACGGCATTGATATGTGAATACTTAGACTGGGCGCAGCTGAGCCACACGCTAAAAGTTTATCTGCCCGAGTGTAATTTGCAAAAGGATTCTTGGAAATTTGAGTTGAAGGACTTCAGTAACAAGAACGGATATGACCTTAACAGAAATGGGGATGGTGGTCCCTTGCAACGATCGTGCTTGAAGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

5.37

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_2	PF16045	102 - 128	5.2e-13	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022523)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g14320
rosa_chinensis	RchiOBHm_Chr2g0140211
rosa_samantha	Rh1BG163300 Rh1DG194100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	31, 97, 197, 412, 487
AluBI	AGCT	5 cut(s)	127, 169, 255, 277, 343
AluI	AGCT	5 cut(s)	127, 169, 255, 277, 343
Alw26I	GTCTC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	255, 274, 340
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	3 cut(s)	23, 244, 340
AspS9I	GGNCC	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	289, 321
BbvI	GCAGC	3 cut(s)	242, 286, 352
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	2 cut(s)	24, 245
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	256, 275, 341
BlpI	GCTNAGC	3 cut(s)	165, 270, 344
BlsI	GCNGC	3 cut(s)	257, 276, 342
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	466
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu1102I	GCTNAGC	3 cut(s)	165, 270, 344
BsaBI	GATNNNNATC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	3 cut(s)	156, 161, 335
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	242, 286, 352
Bsh1285I	CGRYCG	2 cut(s)	265, 479
BsiEI	CGRYCG	2 cut(s)	265, 479
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	24, 77, 239
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	262, 476
Bsp1720I	GCTNAGC	3 cut(s)	165, 270, 344
BspCNI	CTCAG	3 cut(s)	157, 162, 336
BspLI	GGNNCC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	262, 476
BssT1I	CCWWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	146, 192
BstC8I	GCNNGC	3 cut(s)	13, 25, 233
BstDEI	CTNAG	5 cut(s)	165, 170, 270, 328, 344
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	2 cut(s)	24, 245
BstHHI	GCGC	3 cut(s)	23, 244, 340
BstKTI	GATC	2 cut(s)	265, 479
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	262, 476
BstMCI	CGRYCG	2 cut(s)	265, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 241
BstV1I	GCAGC	3 cut(s)	242, 286, 352
BstXI	CCANNNNNNTGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	13, 25, 233
CfoI	GCGC	3 cut(s)	23, 244, 340
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	464
CviAII	CATG	1 cut(s)	281
DdeI	CTNAG	5 cut(s)	165, 170, 270, 328, 344
DpnI	GATC	2 cut(s)	264, 478
DpnII	GATC	2 cut(s)	262, 476
Eam1104I	CTCTTC	2 cut(s)	146, 192
EarI	CTCTTC	2 cut(s)	146, 192
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	284
FaiI	YATR	3 cut(s)	282, 319, 438
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	256, 275, 341
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	256, 275, 341
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	3 cut(s)	22, 243, 339
GluI	GCNGC	3 cut(s)	256, 275, 341
HaeII	RGCGCY	2 cut(s)	24, 245
HapII	CCGG	3 cut(s)	24, 77, 239
HhaI	GCGC	3 cut(s)	23, 244, 340
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	3 cut(s)	21, 242, 338
HinP1I	GCGC	3 cut(s)	21, 242, 338
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	24, 77, 239
Hpy188III	TCNNGA	1 cut(s)	294
HpyAV	CCTTC	7 cut(s)	83, 159, 221, 291, 300, 406, 481
HpyCH4V	TGCA	3 cut(s)	258, 385, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 241
HpyF3I	CTNAG	5 cut(s)	165, 170, 270, 328, 344
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	3 cut(s)	21, 242, 338
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	262, 476
LmnI	GCTCC	2 cut(s)	124, 282
LpnPI	CCDG	6 cut(s)	25, 37, 87, 90, 252, 319
Lsp1109I	GCAGC	3 cut(s)	242, 286, 352
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	2 cut(s)	264, 478
MboI	GATC	2 cut(s)	262, 476
MboII	GAAGA	2 cut(s)	133, 209
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	3 cut(s)	192, 379, 401
MnlI	CCTC	6 cut(s)	37, 155, 181, 193, 196, 246
MroNI	GCCGGC	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	316
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	3 cut(s)	24, 77, 239
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	161, 241
NaeI	GCCGGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	262, 476
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	466
PdiI	GCCGGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	257, 276, 342
Ple19I	CGATCG	2 cut(s)	265, 479
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	209
PvuI	CGATCG	2 cut(s)	265, 479
PvuII	CAGCTG	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	256, 275, 341
Sau3AI	GATC	2 cut(s)	262, 476
Sau96I	GGNCC	1 cut(s)	464
SetI	ASST	8 cut(s)	129, 171, 213, 257, 279, 302, 345, 444
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	3 cut(s)	192, 379, 401
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	192, 379, 401
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseI	GCWGC	3 cut(s)	255, 274, 340
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	447
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.