pycom01g14790

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0020384
Physical Location & Seq
Forward (+)
14868936 .. 14869786
851 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGGCAACCTCCAATCCAAGTTTTTGTTTGAAGCTCCTCATCGATACAAAGGGTCAACGAGTTCTCTTTGCTGAAGCTGGCAAAGACTTTGTGGACTTTCTCCTTACAATCCTGTCTTTGCCTCTTGGCACTGTCATCCGGCTCCTCTCCAAAGATGGCATGGTTGGCTCGTTAGGCAAGCTTTACGGCAGTGTCGAAAGCCTAAGCAGCACATACATGCAACCACACTTTAACAAGGAATCCCTTCTGAAACCTAAGGCAACAGCAACAATTAATGTTGGTGCTGATGTCCTTCATATGCTGACGATAGATGACTCGTCTGCTGAAAAGTCAATCTATGGTTGTCGTAAATGTTATGAGTACAACGACCCAATCATTGTGACCGACGACCCTAAAGCCACTTGTCCGAACTGCCGTTCAAGCATAAATACCAAGGCGACTTTTGTCCGTGGATCCGCTGCTGAAATAACAAAGTTCGGCGAGAGAGGGTATGTGAAAGGTGTTGTGACTTATATGATTACGGATGACCTGGAAGTGAAGCCCTTGTCTAGCATTTCTTGCATAACAATGCTAAACAGGTTCAACGTCAAGGATATTGGTGCCCTCGAAGAGAAAGTGGTCCATCTTACCATGGAAGAGGGTGTCAAATTGCTGAGGGTATCGTTGCAGTCAAACTTGGTTCTGACCACCGTGTTCCTTGATAAGAATGAATCGTGCATGGAGTTGTCCATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

246

Amino Acids

26.9

Weight (kDa)

5.98

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 5 - 238 5.8e-44 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020384)

Species Orthologous Gene IDs
malus_domestica MD01G1121000.v1.1 MD01G1121100.v1.1
pyrus_communis pycom01g14770 pycom01g14790 pycom01g14800 pycom01g14810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AciI CCGC 1 cut(s) 456
AclWI GGATC 2 cut(s) 447, 460
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 3 cut(s) 31, 420, 583
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 3 cut(s) 34, 77, 181
AluI AGCT 3 cut(s) 34, 77, 181
AlwI GGATC 2 cut(s) 447, 460
ApeKI GCWGC 2 cut(s) 207, 458
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 619
AvaII GGWCC 1 cut(s) 619
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 604
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 219, 445
BccI CCATC 2 cut(s) 149, 630
BceAI ACGGC 2 cut(s) 202, 399
BciT130I CCWGG 1 cut(s) 530
BfaI CTAG 1 cut(s) 549
BisI GCNGC 2 cut(s) 208, 459
BlsI GCNGC 2 cut(s) 209, 460
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 3 cut(s) 143, 454, 601
BmrFI CCNGG 1 cut(s) 530
BoxI GACNNNNGTC 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 203, 653
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 432, 448, 630
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 530
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 432, 448, 630
BseGI GGATG 2 cut(s) 135, 529
BseMII CTCAG 1 cut(s) 644
BseRI GAGGAG 2 cut(s) 26, 134
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 2 cut(s) 219, 445
BshNI GGYRCC 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 1 cut(s) 452
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 645
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 143, 454, 601
BspPI GGATC 2 cut(s) 447, 460
BspT107I GGYRCC 1 cut(s) 599
BssECI CCNNGG 3 cut(s) 432, 448, 630
BssMI GATC 1 cut(s) 452
BssT1I CCWWGG 2 cut(s) 432, 630
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 133, 691
Bst6I CTCTTC 2 cut(s) 603, 630
BstAPI GCANNNNNTGC 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 79, 179
BstDEI CTNAG 3 cut(s) 203, 255, 653
BstDSI CCRYGG 2 cut(s) 448, 630
BstF5I GGATG 2 cut(s) 135, 529
BstKTI GATC 1 cut(s) 455
BstMBI GATC 1 cut(s) 452
BstMWI GCNNNNNNNGC 5 cut(s) 165, 174, 207, 420, 558
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 219, 445
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 448, 630
BtsCI GGATG 2 cut(s) 135, 529
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 129, 196
Cac8I GCNNGC 2 cut(s) 79, 179
Cfr13I GGNCC 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 361
CviAII CATG 4 cut(s) 160, 217, 631, 718
CviJI RGCY 8 cut(s) 34, 77, 142, 168, 181, 201, 398, 541
CviKI_1 RGCY 8 cut(s) 34, 77, 142, 168, 181, 201, 398, 541
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 203, 255, 653
DpnI GATC 1 cut(s) 454
DpnII GATC 1 cut(s) 452
Eam1104I CTCTTC 2 cut(s) 603, 630
EarI CTCTTC 2 cut(s) 603, 630
Eco130I CCWWGG 2 cut(s) 432, 630
Eco47I GGWCC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 2 cut(s) 432, 630
ErhI CCWWGG 2 cut(s) 432, 630
FaeI CATG 4 cut(s) 163, 220, 634, 721
FatI CATG 4 cut(s) 159, 216, 630, 717
FauNDI CATATG 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 208, 459
FokI GGATG 2 cut(s) 122, 536
Fsp4HI GCNGC 2 cut(s) 208, 459
FspBI CTAG 1 cut(s) 549
GluI GCNGC 2 cut(s) 208, 459
HapII CCGG 1 cut(s) 139
Hin1II CATG 4 cut(s) 163, 220, 634, 721
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 3 cut(s) 239, 314, 710
HpaII CCGG 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 56, 94
Hpy188I TCNGA 3 cut(s) 249, 408, 684
Hpy8I GTNNAC 2 cut(s) 56, 94
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 2 cut(s) 254, 302
HpyCH4III ACNGT 2 cut(s) 133, 691
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 4 cut(s) 220, 561, 667, 717
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 174, 207, 420, 558
HpyF3I CTNAG 3 cut(s) 203, 255, 653
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 4 cut(s) 163, 220, 634, 721
Kzo9I GATC 1 cut(s) 452
LmnI GCTCC 2 cut(s) 39, 147
LpnPI CCDG 6 cut(s) 63, 125, 152, 515, 542, 562
Lsp1109I GCAGC 2 cut(s) 219, 445
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 2 cut(s) 379, 505
MalI GATC 1 cut(s) 454
MboI GATC 1 cut(s) 452
MboII GAAGA 2 cut(s) 620, 647
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 2 cut(s) 270, 647
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 8 cut(s) 19, 47, 132, 155, 479, 614, 631, 648
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 2 cut(s) 231, 273
MslI CAYNNNNRTG 2 cut(s) 215, 566
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 5 cut(s) 165, 174, 207, 420, 558
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 297
NdeII GATC 1 cut(s) 452
NlaIII CATG 4 cut(s) 163, 220, 634, 721
NlaIV GGNNCC 3 cut(s) 143, 454, 601
NmuCI GTSAC 2 cut(s) 379, 505
NspI RCATGY 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 239, 710
PkrI GCNGC 2 cut(s) 209, 460
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PshAI GACNNNNGTC 1 cut(s) 443
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 143, 454, 601
PspPI GGNCC 1 cut(s) 619
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 2 cut(s) 215, 566
SaqAI TTAA 2 cut(s) 231, 273
SatI GCNGC 2 cut(s) 208, 459
Sau3AI GATC 1 cut(s) 452
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 604
SetI ASST 9 cut(s) 11, 36, 79, 183, 256, 502, 531, 581, 588
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 2 cut(s) 215, 566
Sse9I AATT 2 cut(s) 270, 647
SsiI CCGC 1 cut(s) 456
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 2 cut(s) 432, 630
TaaI ACNGT 2 cut(s) 133, 691
TaiI ACGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 42, 195, 606
TaqII GACCGA 1 cut(s) 398
TasI AATT 2 cut(s) 270, 647
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 2 cut(s) 239, 710
Tru1I TTAA 2 cut(s) 231, 273
Tru9I TTAA 2 cut(s) 231, 273
TscAI CASTG 2 cut(s) 136, 196
TseFI GTSAC 2 cut(s) 379, 505
TseI GCWGC 2 cut(s) 207, 458
Tsp45I GTSAC 2 cut(s) 379, 505
TspDTI ATGAA 2 cut(s) 284, 723
TspGWI ACGGA 2 cut(s) 437, 536
TspRI CASTG 2 cut(s) 136, 196
VpaK11BI GGWCC 1 cut(s) 619
VspI ATTAAT 1 cut(s) 273
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.