Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0022411

Physical Location & Seq

Genomic Coordinates Forward (+)

21223449 .. 21224310

Gene Structure 862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCTTCGTTAAGCAGGGAGCTAGTATTGATGATCTTACAGTTCTTAGATGAGGAGAAGTTCAAGGAAACAGTTCATAGGCTTGAGCAAGAGTCCGGTTTTTTCTTCAATATGAAGCATTTCGAGGACCAAGTCCAGGCTGGAGAGTGGGATGAAGTTGAGCGCTATTTGTGTGGCTTCACTAAAGTTGAAGACAACCGGTATTCAATGAAGATTTTTTTTGAAATTAGGAAGCAGAAGTATTTGGAAGCTCTTGACAGTGCTGCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

91

Amino Acids

10.81

Weight (kDa)

4.89

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	1.5e-11	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 87	9.4e-25	TPR1-like, CTLH-containing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022411)

Species	Orthologous Gene IDs
malus_domestica	MD00G1020100.v1.1 MD00G1021500.v1.1 MD00G1021600.v1.1
pyrus_communis	pycom01g24250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgeI	ACCGGT	1 cut(s)	198
AgsI	TTSAA	5 cut(s)	64, 109, 191, 207, 224
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	22, 251
AluI	AGCT	2 cut(s)	22, 251
Aor51HI	AGCGCT	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	198
Asp700I	GAANNNNTTC	2 cut(s)	72, 119
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	104
BsaWI	WCCGGW	2 cut(s)	95, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	250
BshTI	ACCGGT	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	96, 199
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	42, 73, 260
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	127
CspAI	ACCGGT	1 cut(s)	198
CviJI	RGCY	5 cut(s)	22, 82, 140, 177, 251
CviKI_1	RGCY	5 cut(s)	22, 82, 140, 177, 251
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	127
Eco47III	AGCGCT	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	135
FaiI	YATR	2 cut(s)	78, 113
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	166
HapII	CCGG	2 cut(s)	96, 199
HhaI	GCGC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	96, 199
Hpy188III	TCNNGA	1 cut(s)	254
HpyCH4III	ACNGT	3 cut(s)	42, 73, 260
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	109, 122, 126, 149, 212, 252
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	97, 203, 223
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	2 cut(s)	46, 118
MroXI	GAANNNNTTC	2 cut(s)	72, 119
MseI	TTAA	1 cut(s)	11
MspI	CCGG	2 cut(s)	96, 199
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	33
PdmI	GAANNNNTTC	2 cut(s)	72, 119
PflFI	GACNNNGTC	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	2 cut(s)	24, 253
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	42, 73, 260
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	4 cut(s)	65, 128, 168, 224
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmnI	GAANNNNTTC	2 cut(s)	72, 119
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.