Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0024613

Physical Location & Seq

Genomic Coordinates Forward (+)

135791 .. 136489

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGATTTTGTTAGACCTACAGGTCGATGTAGGAAATTTTCTCCGTTTGAAGTCTTGTGTTCTCTATACAGAACTTGAAAACCCAGATGAACCTCTGATAAACGTGGAAGTCGTTGCTCATGCTACACAGCCAGAGCTTAGGTCCAGTGAGGTATCAAACAAATTCTACTTCACATTCTCTGTCCCTCCTGAAGCCATGAAAGATGGGATCCGGATTCGGAGCGTACTTCCTGCTACAGAAGAGGAAGCACGGCGGGTGATTGAACGTATGGATGCTGAGAACTCCCAGTTTGCTGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

4.61

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024613)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00220
rosa_chinensis	RchiOBHm_Chr6g0282001
rosa_multiflora	Rmu_sc0017508.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	2 cut(s)	205, 218
AcsI	RAATTY	2 cut(s)	37, 164
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	52, 80, 266
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AlwI	GGATC	2 cut(s)	205, 218
Aor13HI	TCCGGA	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	2 cut(s)	37, 164
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	20, 237
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	147, 289
BseAI	TCCGGA	1 cut(s)	213
BseGI	GGATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	147, 289
BseXI	GCAGC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	205, 218
BsrI	ACTGG	2 cut(s)	147, 289
BssMI	GATC	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	140, 279
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstSFI	CTRYAG	2 cut(s)	20, 237
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	122, 199
CviJI	RGCY	3 cut(s)	133, 139, 197
CviKI_1	RGCY	3 cut(s)	133, 139, 197
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	140, 279
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	213
FaeI	CATG	2 cut(s)	125, 202
FaiI	YATR	4 cut(s)	69, 123, 200, 272
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	121, 198
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	2 cut(s)	125, 202
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	99, 222
Hpy188III	TCNNGA	2 cut(s)	191, 214
HpyCH4IV	ACGT	2 cut(s)	105, 268
HpyF3I	CTNAG	2 cut(s)	140, 279
HpySE526I	ACGT	2 cut(s)	105, 268
Hsp92II	CATG	2 cut(s)	125, 202
Kpn2I	TCCGGA	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	8, 99, 147, 160, 204, 227, 246, 302
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	2 cut(s)	105, 268
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	2 cut(s)	37, 164
MnlI	CCTC	4 cut(s)	105, 145, 198, 238
MroI	TCCGGA	1 cut(s)	213
MspI	CCGG	1 cut(s)	214
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	125, 202
NlaIV	GGNNCC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	144
SetI	ASST	8 cut(s)	21, 27, 97, 108, 141, 146, 156, 271
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	2 cut(s)	20, 237
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	37, 164
SsiI	CCGC	1 cut(s)	256
TaiI	ACGT	2 cut(s)	108, 271
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	37, 164
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	105, 215
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	37, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.