RchiOBHm_Chr6g0282001

Acyl-coenzyme A thioesterase 9

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
45354425 .. 45354753
329 bp
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UTR
Exon/CDS
Intron
PRQ25295

Sequence Viewer

Length: 189 bp
ATGAACCAATTTGTGGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGCTGATCCTGATCAGCCCCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCAGAACTCAGGTCCAGTGAGCTATGTTCTACCAACTGCACATTAAGAACAAGAAAGTTAAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.08

Weight (kDa)

5.64

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024613)

Species Orthologous Gene IDs
pyrus_communis pycom02g00220
rosa_chinensis RchiOBHm_Chr6g0282001
rosa_multiflora Rmu_sc0017508.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 13
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 2 cut(s) 43, 98
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 68, 142
AluI AGCT 2 cut(s) 68, 142
AlwI GGATC 1 cut(s) 65
AlwNI CAGNNNCTG 2 cut(s) 68, 85
AoxI GGCC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 13
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 70, 76
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 135
BssMI GATC 2 cut(s) 70, 76
Bst2UI CCWGG 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 2 cut(s) 73, 79
BstMBI GATC 2 cut(s) 70, 76
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 142
CaiI CAGNNNCTG 2 cut(s) 68, 85
Cfr13I GGNCC 1 cut(s) 132
CviAII CATG 1 cut(s) 110
CviJI RGCY 4 cut(s) 68, 82, 121, 142
CviKI_1 RGCY 4 cut(s) 68, 82, 121, 142
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 72, 78
DpnII GATC 2 cut(s) 70, 76
Eco47I GGWCC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 113
FaiI YATR 2 cut(s) 111, 145
FatI CATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 76
FokI GGATG 1 cut(s) 32
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 70, 76
LpnPI CCDG 8 cut(s) 47, 87, 98, 103, 115, 130, 135, 148
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 72, 78
MboI GATC 2 cut(s) 70, 76
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 4
MseI TTAA 2 cut(s) 164, 179
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NdeII GATC 2 cut(s) 70, 76
NlaIII CATG 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 132
PstNI CAGNNNCTG 2 cut(s) 68, 85
SaqAI TTAA 2 cut(s) 164, 179
Sau3AI GATC 2 cut(s) 70, 76
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 118
SetI ASST 3 cut(s) 70, 134, 144
SinI GGWCC 1 cut(s) 132
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 116
TasI AATT 1 cut(s) 8
Tru1I TTAA 2 cut(s) 164, 179
Tru9I TTAA 2 cut(s) 164, 179
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.