Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017508.1

Orthogroup ID

OG0024613

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 444

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017508.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

gttgttgctcatgttacacagcctgagctcaggtccagtgaggtgtctaataaattctacttcacattttctgtacatcccgaggccgtgaaagatggtgtccggattcgcaatgttgttcctgctacagaagaggaagcactgcgtgtgattgaacgtatcgatgcagagaactcccatattgctgcatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

64

Amino Acids

7.15

Weight (kDa)

5.49

Isoelectric Point (pI)

78.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024613)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00220
rosa_chinensis	RchiOBHm_Chr6g0282001
rosa_multiflora	Rmu_sc0017508.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	53
AdeI	CACNNNGTG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	154
Bpu10I	CCTNAGC	2 cut(s)	24, 29
Bsa29I	ATCGAT	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	15, 43
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	103
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	73
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	16, 42
BspDI	ATCGAT	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	24, 29
BstF5I	GGATG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	43, 140
CciI	TCATGA	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	33
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	11, 192
CviJI	RGCY	3 cut(s)	22, 28, 86
CviKI_1	RGCY	3 cut(s)	22, 28, 86
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	24, 29
DraIII	CACNNNGTG	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	14, 195
FaiI	YATR	3 cut(s)	12, 180, 193
FatI	CATG	2 cut(s)	10, 191
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	14, 195
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	103
Hpy188III	TCNNGA	3 cut(s)	80, 103, 192
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	167, 188
HpyF3I	CTNAG	2 cut(s)	24, 29
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	14, 195
Kpn2I	TCCGGA	1 cut(s)	102
LpnPI	CCDG	5 cut(s)	16, 36, 49, 116, 135
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	3 cut(s)	34, 76, 127
MroI	TCCGGA	1 cut(s)	102
MspI	CCGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	14, 195
PagI	TCATGA	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	4 cut(s)	30, 35, 45, 160
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	30
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	106
TscAI	CASTG	2 cut(s)	43, 147
TseI	GCWGC	1 cut(s)	185
TspRI	CASTG	2 cut(s)	43, 147
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.