pycom02g02070

Rap1-interacting factor 1 N terminal

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
1246879 .. 1247133
255 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGAATCAGTTTCTTATGGTTCACAATGATGGATGCGTAGTTTGCTTTAATCTTTGTACTAAAAAGCTTATGTATATTCCCATTGAAACACGAGGTGAGTTTGTTGGTTATGTGAATAGCATAGTTTCGGTCAAGGGACGCAACCACAAGCCTGAGAGCATGGAGAATAATTGCTCAGACAAAGATGGAGATGCGATGGTGGTGGTAGACGGGAAGAGGGAAAGCTGCATGAGGCGGTACACGTATTCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.59

Weight (kDa)

7.62

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022381)

Species Orthologous Gene IDs
malus_domestica MD02G1023400.v1.1 MD02G1024300.v1.1 MD02G1024700.v1.1
pyrus_communis pycom02g02070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AciI CCGC 1 cut(s) 235
AdeI CACNNNGTG 1 cut(s) 95
AfaI GTAC 2 cut(s) 58, 239
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 2 cut(s) 67, 225
AluI AGCT 2 cut(s) 67, 225
ApeKI GCWGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 107
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 1 cut(s) 212
BccI CCATC 3 cut(s) 23, 179, 190
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmsI GCATC 2 cut(s) 23, 181
BsaAI YACGTR 1 cut(s) 243
BseGI GGATG 1 cut(s) 38
BseMII CTCAG 2 cut(s) 144, 189
BseXI GCAGC 1 cut(s) 212
BslFI GGGAC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 150
BspACI CCGC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 145, 188
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 209
BstBAI YACGTR 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 153, 175
BstF5I GGATG 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 38
CseI GACGC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 57, 238
CviAII CATG 2 cut(s) 160, 229
CviJI RGCY 3 cut(s) 67, 151, 225
CviKI_1 RGCY 3 cut(s) 67, 151, 225
CviQI GTAC 2 cut(s) 57, 238
DdeI CTNAG 2 cut(s) 153, 175
DraIII CACNNNGTG 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
FaeI CATG 2 cut(s) 163, 232
FaiI YATR 7 cut(s) 17, 71, 75, 111, 122, 161, 230
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 159, 228
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
HgaI GACGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 163, 232
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 22, 208, 240
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 3 cut(s) 22, 208, 240
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 153, 175
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 163, 232
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 2 cut(s) 23, 181
MaeII ACGT 1 cut(s) 242
MboII GAAGA 1 cut(s) 226
MluCI AATT 1 cut(s) 169
MnlI CCTC 3 cut(s) 86, 210, 225
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 42
NlaIII CATG 2 cut(s) 163, 232
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 243
RsaI GTAC 2 cut(s) 58, 239
RsaNI GTAC 2 cut(s) 57, 238
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 226
SetI ASST 4 cut(s) 69, 97, 227, 245
SfaNI GCATC 2 cut(s) 23, 181
SgeI CNNG 8 cut(s) 102, 104, 145, 160, 164, 172, 223, 241
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 235
TaiI ACGT 1 cut(s) 245
TaqII GACCGA 1 cut(s) 118
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.