pycom02g03240

Protein of unknown function (DUF502)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
2125394 .. 2125624
231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGCACGTAATAATCCGGCTAGCAGAGACAGAGAAGCGCGATCGTGAGCTTCTCATTCCGGTGGCAGACTACGGCGACGAAGATGCATCGTCTAAACCCTCCTCGTCTTCCTCCTCCTCCTACCGCACCGGCCGCGAGGTGAGTTTCGATTGCTGTTTGTTTTCATTGCTTTGCGTGTTGTATTGTGTTTGGTCGCTGAGAAAATGGAGGAAAATTCGAGGGAAAAGCTGA

Protein Analysis

77

Amino Acids

8.73

Weight (kDa)

8.8

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022410)

Species Orthologous Gene IDs
malus_domestica MD00G1011600.v1.1
pyrus_communis pycom02g03240 pycom02g03400
rosa_roxburghii Rroxscaffold_2G00090190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 39, 135
AciI CCGC 2 cut(s) 124, 133
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 213
AluBI AGCT 2 cut(s) 49, 228
AluI AGCT 2 cut(s) 49, 228
Alw26I GTCTC 1 cut(s) 20
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmsI GCATC 2 cut(s) 73, 95
BmtI GCTAGC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 3 cut(s) 91, 103, 106
BseX3I CGGCCG 1 cut(s) 130
Bsh1236I CGCG 2 cut(s) 39, 135
Bsh1285I CGRYCG 2 cut(s) 43, 133
BshFI GGCC 1 cut(s) 132
BsiEI CGRYCG 2 cut(s) 43, 133
BsiSI CCGG 3 cut(s) 16, 59, 129
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 124, 133
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 2 cut(s) 39, 135
BspOI GCTAGC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssMI GATC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 197
BstFNI CGCG 2 cut(s) 39, 135
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 40
BstMCI CGRYCG 2 cut(s) 43, 133
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstUI CGCG 2 cut(s) 39, 135
BstV2I GAAGAC 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 128
CviJI RGCY 4 cut(s) 19, 49, 132, 228
CviKI_1 RGCY 4 cut(s) 19, 49, 132, 228
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 20
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 132
HapII CCGG 3 cut(s) 16, 59, 129
HhaI GCGC 1 cut(s) 39
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HpaII CCGG 3 cut(s) 16, 59, 129
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 4, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 6
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 29, 72, 142
LweI GCATC 2 cut(s) 73, 95
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 6
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 92, 99
MluCI AATT 1 cut(s) 213
MnlI CCTC 8 cut(s) 109, 112, 121, 124, 127, 130, 201, 212
Mph1103I ATGCAT 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 3 cut(s) 16, 59, 129
MvnI CGCG 2 cut(s) 39, 135
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 1 cut(s) 40
NheI GCTAGC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 88
PkrI GCNGC 1 cut(s) 134
Ple19I CGATCG 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 7
PvuI CGATCG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 40
SetI ASST 4 cut(s) 9, 51, 141, 230
SfaNI GCATC 2 cut(s) 73, 95
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 1 cut(s) 213
SsiI CCGC 2 cut(s) 124, 133
SspMI CTAG 1 cut(s) 20
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 147, 217
TasI AATT 1 cut(s) 213
TauI GCSGC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 213
XspI CTAG 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.