Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0024615

Physical Location & Seq

Genomic Coordinates Reverse (-)

4050915 .. 4051953

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCCGAGTCGGAGCCGGCTCTGGCCAGCTACCTCTACTCCACCATACTCTCCCACTCGTCGCTGGAGCGATCGCTGTCGTTTCACCTGGGGAACAAGCTCTGCTCTTCCACCCTCCTTTCGACGCTCCTCTACGACCTCTTCCTCAACACCTTCTCCTCTGACCCCTCCTTACGTGCCGCCGCCGTTGCGGATCTCTGCGCCGCCCACGAGCGCGACCCCGCCTGCGTCTCGTTTTCCCACTGCCTGCTCAATTACAAAGGCTTCCTGGCCTGTCAGGCGCATCGAGTGGCGCACAAGCTGTGGATCGATCTTCCAGAACCGTAGGCCGCTGGCGCTTGCGCTACACTCGAGGATCGCGGACGTGTTCGCGGTGGACATACACCCAGCGGCGAGGATCGGAAAGGGGGTGCTGTTCGACCACGCGACAGGGGTGGTGGTGGGGGAGACGGCGGTGATCGGGAACAACGTGTCGATACTCCACCACGTGACGCTGGGTGGCACCGGGAAAGCCGGCGGAGACCGGCACCCGAAGATCGGCGATGGGGTTTTGATCGGTGCGAGCGCGACGATTTTGGGGAATGTGAAGATTGGGGAGGGCGCAAAGATTGGGGCGGGGTCGGTTGTGCTGATTGATGTTCCTCCGAGAACCACGGCGGTGGGAAATCCGGCGAGATTGGTTGGCGGGAAGGAACGGCCGTCGAAGCACGAGGATGTGCCTGGCCAGTCCATGGATCACACCTCGTTTATGTCTGAGTGGTCCGACTACATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

259

Amino Acids

27.39

Weight (kDa)

10.51

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	176 - 209	2.9e-11	Bacterial transferase hexapeptide (six repeats)
Hexapep_2	PF14602	178 - 209	9e-06	Hexapeptide repeat of succinyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024615)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g06020
rosa_multiflora	Rmu_co8121202.1_g000001
rosa_samantha	Rh2DG076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	500, 525
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccII	CGCG	5 cut(s)	215, 359, 371, 425, 566
AclWI	GGATC	5 cut(s)	200, 313, 362, 404, 741
AcoI	YGGCCR	3 cut(s)	23, 695, 721
AcvI	CACGTG	1 cut(s)	487
AdeI	CACNNNGTG	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	536, 730
AflIII	ACRYGT	2 cut(s)	363, 468
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	3 cut(s)	86, 266, 718
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	3 cut(s)	29, 99, 300
AluI	AGCT	3 cut(s)	29, 99, 300
Alw26I	GTCTC	3 cut(s)	234, 440, 513
AlwI	GGATC	5 cut(s)	200, 313, 362, 404, 741
Ama87I	CYCGRG	1 cut(s)	349
AoxI	GGCC	5 cut(s)	23, 269, 326, 695, 721
AsiSI	GCGATCGC	1 cut(s)	73
AspLEI	GCGC	8 cut(s)	202, 215, 282, 294, 337, 343, 566, 602
AspS9I	GGNCC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	76, 466
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	759
BalI	TGGCCA	2 cut(s)	25, 723
BanI	GGYRCC	2 cut(s)	500, 525
BauI	CACGAG	2 cut(s)	208, 707
BbrPI	CACGTG	1 cut(s)	487
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	5 cut(s)	169, 465, 669, 682, 710
BciT130I	CCWGG	3 cut(s)	88, 268, 720
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	3 cut(s)	234, 440, 513
BfoI	RGCGCY	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	277
BisI	GCNGC	5 cut(s)	179, 182, 203, 329, 390
BlsI	GCNGC	5 cut(s)	180, 183, 204, 330, 391
Bme1390I	CCNGG	4 cut(s)	88, 268, 505, 720
Bme18I	GGWCC	1 cut(s)	759
BmeT110I	CYCGRG	1 cut(s)	349
BmgBI	CACGTC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	3 cut(s)	14, 502, 527
BmrFI	CCNGG	4 cut(s)	88, 268, 505, 720
BmsI	GCATC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	2 cut(s)	175, 487
BsaI	GGTCTC	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	87, 651, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 139, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 730
Bse118I	RCCGGY	3 cut(s)	15, 512, 522
Bse1I	ACTGG	1 cut(s)	724
BseBI	CCWGG	3 cut(s)	88, 268, 720
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	87, 651, 729
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	2 cut(s)	536, 730
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	2 cut(s)	118, 147
BseX3I	CGGCCG	1 cut(s)	695
BseYI	CCCAGC	2 cut(s)	385, 493
Bsh1236I	CGCG	5 cut(s)	215, 359, 371, 425, 566
Bsh1285I	CGRYCG	2 cut(s)	73, 698
BshFI	GGCC	5 cut(s)	25, 271, 328, 697, 723
BshNI	GGYRCC	2 cut(s)	500, 525
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	2 cut(s)	73, 698
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	5 cut(s)	16, 504, 513, 523, 668
BslI	CCNNNNNNNGG	2 cut(s)	536, 730
BsmAI	GTCTC	3 cut(s)	234, 440, 513
BsmBI	CGTCTC	2 cut(s)	234, 440
BsnI	GGCC	5 cut(s)	25, 271, 328, 697, 723
Bso31I	GGTCTC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	729
BspANI	GGCC	5 cut(s)	25, 271, 328, 697, 723
BspCNI	CTCAG	1 cut(s)	745
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	5 cut(s)	215, 359, 371, 425, 566
BspLI	GGNNCC	3 cut(s)	14, 502, 527
BspPI	GGATC	5 cut(s)	200, 313, 362, 404, 741
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	2 cut(s)	500, 525
BspTNI	GGTCTC	1 cut(s)	513
BsrFI	RCCGGY	3 cut(s)	15, 512, 522
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	3 cut(s)	15, 512, 522
BssECI	CCNNGG	3 cut(s)	87, 651, 729
BssSI	CACGAG	2 cut(s)	208, 707
BssT1I	CCWWGG	1 cut(s)	729
Bst2BI	CACGAG	2 cut(s)	208, 707
Bst2UI	CCWGG	3 cut(s)	88, 268, 720
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	111, 145
BstBAI	YACGTR	2 cut(s)	175, 487
BstC8I	GCNNGC	8 cut(s)	17, 27, 225, 247, 333, 339, 514, 562
BstDEI	CTNAG	1 cut(s)	753
BstDSI	CCRYGG	2 cut(s)	651, 729
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	5 cut(s)	215, 359, 371, 425, 566
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	8 cut(s)	202, 215, 282, 294, 337, 343, 566, 602
BstMAI	GTCTC	3 cut(s)	234, 440, 513
BstMCI	CGRYCG	2 cut(s)	73, 698
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 277, 334, 703
BstNI	CCWGG	3 cut(s)	88, 268, 720
BstSCI	CCNGG	4 cut(s)	86, 266, 503, 718
BstUI	CGCG	5 cut(s)	215, 359, 371, 425, 566
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	308
BsuRI	GGCC	5 cut(s)	25, 271, 328, 697, 723
BsuTUI	ATCGAT	1 cut(s)	308
BtgI	CCRYGG	2 cut(s)	651, 729
BtgZI	GCGATG	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	8 cut(s)	17, 27, 225, 247, 333, 339, 514, 562
CfoI	GCGC	8 cut(s)	202, 215, 282, 294, 337, 343, 566, 602
Cfr10I	RCCGGY	3 cut(s)	15, 512, 522
Cfr13I	GGNCC	1 cut(s)	759
ClaI	ATCGAT	1 cut(s)	308
CseI	GACGC	3 cut(s)	132, 216, 499
CviAII	CATG	1 cut(s)	730
DdeI	CTNAG	1 cut(s)	753
DraIII	CACNNNGTG	1 cut(s)	487
EaeI	YGGCCR	3 cut(s)	23, 695, 721
EagI	CGGCCG	1 cut(s)	695
Eam1104I	CTCTTC	2 cut(s)	111, 145
EarI	CTCTTC	2 cut(s)	111, 145
EciI	GGCGGA	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	759
Eco52I	CGGCCG	1 cut(s)	695
Eco72I	CACGTG	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	86, 266, 718
EcoT14I	CCWWGG	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	2 cut(s)	234, 440
FaeI	CATG	1 cut(s)	733
FaiI	YATR	6 cut(s)	46, 380, 731, 749, 773, 775
FatI	CATG	1 cut(s)	729
FauI	CCCGC	3 cut(s)	228, 607, 677
Fnu4HI	GCNGC	5 cut(s)	179, 182, 203, 329, 390
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	5 cut(s)	179, 182, 203, 329, 390
GlaI	GCGC	8 cut(s)	201, 214, 281, 293, 336, 342, 565, 601
GluI	GCNGC	5 cut(s)	179, 182, 203, 329, 390
GsaI	CCCAGC	2 cut(s)	389, 497
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	5 cut(s)	25, 271, 328, 697, 723
HapII	CCGG	5 cut(s)	16, 504, 513, 523, 668
HgaI	GACGC	3 cut(s)	132, 216, 499
HhaI	GCGC	8 cut(s)	202, 215, 282, 294, 337, 343, 566, 602
Hin1II	CATG	1 cut(s)	733
Hin6I	GCGC	8 cut(s)	200, 213, 280, 292, 335, 341, 564, 600
HinP1I	GCGC	8 cut(s)	200, 213, 280, 292, 335, 341, 564, 600
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	5 cut(s)	16, 504, 513, 523, 668
HphI	GGTGA	2 cut(s)	76, 466
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	6 cut(s)	12, 162, 401, 645, 754, 763
Hpy188III	TCNNGA	2 cut(s)	316, 460
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	4 cut(s)	63, 126, 571, 703
HpyAV	CCTTC	2 cut(s)	162, 682
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	4 cut(s)	174, 363, 468, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 277, 334, 703
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	4 cut(s)	174, 363, 468, 486
Hsp92II	CATG	1 cut(s)	733
HspAI	GCGC	8 cut(s)	200, 213, 280, 292, 335, 341, 564, 600
KroI	GCCGGC	2 cut(s)	15, 512
KroNI	GCCGGC	2 cut(s)	17, 514
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	3 cut(s)	12, 66, 131
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	4 cut(s)	174, 363, 468, 486
MaeIII	GTNAC	1 cut(s)	487
MboII	GAAGA	5 cut(s)	98, 132, 304, 544, 598
MflI	RGATCY	1 cut(s)	192
MlsI	TGGCCA	2 cut(s)	25, 723
MluCI	AATT	1 cut(s)	252
MluNI	TGGCCA	2 cut(s)	25, 723
MlyI	GAGTC	1 cut(s)	16
Mox20I	TGGCCA	2 cut(s)	25, 723
MroNI	GCCGGC	2 cut(s)	15, 512
MscI	TGGCCA	2 cut(s)	25, 723
MslI	CAYNNNNRTG	2 cut(s)	656, 711
Msp20I	TGGCCA	2 cut(s)	25, 723
MspA1I	CMGCKG	2 cut(s)	331, 389
MspI	CCGG	5 cut(s)	16, 504, 513, 523, 668
MspR9I	CCNGG	4 cut(s)	88, 268, 505, 720
MvaI	CCWGG	3 cut(s)	88, 268, 720
MvnI	CGCG	5 cut(s)	215, 359, 371, 425, 566
MwoI	GCNNNNNNNGC	4 cut(s)	187, 277, 334, 703
NaeI	GCCGGC	2 cut(s)	17, 514
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	729
NgoMIV	GCCGGC	2 cut(s)	15, 512
NlaIII	CATG	1 cut(s)	733
NlaIV	GGNNCC	3 cut(s)	14, 502, 527
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdiI	GCCGGC	2 cut(s)	17, 514
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	5 cut(s)	180, 183, 204, 330, 391
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	487
PmlI	CACGTG	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	2 cut(s)	175, 487
Psp6I	CCWGG	3 cut(s)	86, 266, 718
PspCI	CACGTG	1 cut(s)	487
PspFI	CCCAGC	2 cut(s)	385, 493
PspGI	CCWGG	3 cut(s)	86, 266, 718
PspN4I	GGNNCC	3 cut(s)	14, 502, 527
PspPI	GGNCC	1 cut(s)	759
PspXI	VCTCGAGB	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	73
RgaI	GCGATCGC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	656, 711
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	5 cut(s)	179, 182, 203, 329, 390
Sau96I	GGNCC	1 cut(s)	759
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	4 cut(s)	88, 268, 505, 720
SfaAI	GCGATCGC	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	349
SgfI	GCGATCGC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	759
SlaI	CTCGAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	656, 711
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	86, 266, 503, 718
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	4 cut(s)	177, 366, 471, 489
TaqI	TCGA	7 cut(s)	121, 285, 308, 350, 417, 473, 701
TasI	AATT	1 cut(s)	252
TauI	GCSGC	5 cut(s)	181, 184, 205, 331, 392
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	487
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	759
XhoI	CTCGAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.