Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8121202.1

Orthogroup ID

OG0024615

Physical Location & Seq

Genomic Coordinates Reverse (-)

8 .. 454

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8121202.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ctggcgcttgcgctccactcgcggatagccgacgtgttcgcggtggatattcaccccgcggcgaggatcggaaaaggggtgctgttcgaccacgcgacgggagtggtggtcggggagacggcggtgataggaaacaacgtctccatactccaccacgtgacgcttggagggacaggaaaggccggcggagacaggcatccgaagatcggcgacggggtacttatcggggccggtgcaacgatattggggaatgtgaagattggagagggtgcgaagattggggctgggtcggtggtgcttattgacgtgccggcgaggactacggcggtggggaatcctgcgaggttggttggcgggaaggagaagccgtcgaagcatgaggatgtgcctggagaatccatggaccatacttcgtttatatcggagtggtctgactatattatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

148

Amino Acids

15.05

Weight (kDa)

6.46

Isoelectric Point (pI)

12.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024615)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g06020
rosa_multiflora	Rmu_co8121202.1_g000001
rosa_samantha	Rh2DG076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	22, 41, 59, 95
AciI	CCGC	8 cut(s)	22, 41, 57, 59, 122, 186, 326, 354
AclWI	GGATC	1 cut(s)	74
AcvI	CACGTG	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	63, 97, 206
AflIII	ACRYGT	1 cut(s)	33
AjiI	CACGTC	2 cut(s)	34, 307
AjnI	CCWGG	1 cut(s)	388
Alw26I	GTCTC	3 cut(s)	110, 145, 183
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	2 cut(s)	180, 228
AspLEI	GCGC	2 cut(s)	7, 13
AspS9I	GGNCC	2 cut(s)	228, 403
AsuHPI	GGTGA	2 cut(s)	44, 136
AvaII	GGWCC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	157
BceAI	ACGGC	3 cut(s)	135, 339, 352
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	3 cut(s)	110, 145, 183
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	403
BmgBI	CACGTC	2 cut(s)	34, 307
BmgT120I	GGNCC	2 cut(s)	228, 403
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	57, 399
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 125, 155, 353, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 97, 206
Bse118I	RCCGGY	3 cut(s)	182, 230, 310
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	57, 399
BseGI	GGATG	2 cut(s)	196, 388
BseLI	CCNNNNNNNGG	3 cut(s)	63, 97, 206
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	4 cut(s)	22, 41, 59, 95
BshFI	GGCC	2 cut(s)	182, 230
BsiSI	CCGG	3 cut(s)	183, 231, 311
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	63, 97, 206
BsmAI	GTCTC	3 cut(s)	110, 145, 183
BsmBI	CGTCTC	2 cut(s)	110, 145
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	182, 230
Bsp143I	GATC	2 cut(s)	66, 204
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	8 cut(s)	22, 41, 57, 59, 122, 186, 326, 354
BspANI	GGCC	2 cut(s)	182, 230
BspFNI	CGCG	4 cut(s)	22, 41, 59, 95
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	74
BsrFI	RCCGGY	3 cut(s)	182, 230, 310
BssAI	RCCGGY	3 cut(s)	182, 230, 310
BssECI	CCNNGG	2 cut(s)	57, 399
BssMI	GATC	2 cut(s)	66, 204
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	9, 184, 312
BstDSI	CCRYGG	2 cut(s)	57, 399
BstF5I	GGATG	2 cut(s)	196, 388
BstFNI	CGCG	4 cut(s)	22, 41, 59, 95
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 13
BstKTI	GATC	2 cut(s)	69, 207
BstMAI	GTCTC	3 cut(s)	110, 145, 183
BstMBI	GATC	2 cut(s)	66, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 373
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	4 cut(s)	22, 41, 59, 95
BsuRI	GGCC	2 cut(s)	182, 230
BtgI	CCRYGG	2 cut(s)	57, 399
BtrI	CACGTC	2 cut(s)	34, 307
BtsCI	GGATG	2 cut(s)	196, 388
Cac8I	GCNNGC	3 cut(s)	9, 184, 312
CfoI	GCGC	2 cut(s)	7, 13
Cfr10I	RCCGGY	3 cut(s)	182, 230, 310
Cfr13I	GGNCC	2 cut(s)	228, 403
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	377, 400
CviJI	RGCY	5 cut(s)	29, 182, 230, 284, 367
CviKI_1	RGCY	5 cut(s)	29, 182, 230, 284, 367
CviQI	GTAC	1 cut(s)	218
DpnI	GATC	2 cut(s)	68, 206
DpnII	GATC	2 cut(s)	66, 204
DraIII	CACNNNGTG	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	403
Eco72I	CACGTG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	2 cut(s)	110, 145
FaeI	CATG	2 cut(s)	380, 403
FaiI	YATR	8 cut(s)	146, 378, 401, 408, 419, 438, 443, 445
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	376, 399
FauI	CCCGC	2 cut(s)	64, 347
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	2 cut(s)	183, 395
Fsp4HI	GCNGC	1 cut(s)	60
GlaI	GCGC	2 cut(s)	6, 12
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	182, 230
HapII	CCGG	3 cut(s)	183, 231, 311
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	7, 13
Hin1II	CATG	2 cut(s)	380, 403
Hin6I	GCGC	2 cut(s)	5, 11
HinP1I	GCGC	2 cut(s)	5, 11
HinfI	GANTC	2 cut(s)	334, 395
HpaII	CCGG	3 cut(s)	183, 231, 311
HphI	GGTGA	2 cut(s)	44, 136
Hpy188I	TCNGA	4 cut(s)	71, 201, 424, 433
Hpy99I	CGWCG	4 cut(s)	35, 100, 215, 373
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	4 cut(s)	33, 138, 156, 306
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 373
HpySE526I	ACGT	4 cut(s)	33, 138, 156, 306
Hsp92II	CATG	2 cut(s)	380, 403
HspAI	GCGC	2 cut(s)	5, 11
KroI	GCCGGC	2 cut(s)	182, 310
KroNI	GCCGGC	2 cut(s)	184, 312
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	66, 204
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	9 cut(s)	159, 178, 196, 244, 270, 324, 351, 375, 402
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	4 cut(s)	33, 138, 156, 306
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	68, 206
MboI	GATC	2 cut(s)	66, 204
MboII	GAAGA	3 cut(s)	214, 268, 286
MnlI	CCTC	6 cut(s)	57, 161, 259, 309, 336, 373
MroNI	GCCGGC	2 cut(s)	182, 310
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	3 cut(s)	183, 231, 311
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	4 cut(s)	22, 41, 59, 95
MwoI	GCNNNNNNNGC	2 cut(s)	19, 373
NaeI	GCCGGC	2 cut(s)	184, 312
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	66, 204
NgoMIV	GCCGGC	2 cut(s)	182, 310
NlaIII	CATG	2 cut(s)	380, 403
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	157
PdiI	GCCGGC	2 cut(s)	184, 312
PfeI	GAWTC	2 cut(s)	334, 395
PkrI	GCNGC	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	228, 403
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	381
SacII	CCGCGG	1 cut(s)	60
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	66, 204
Sau96I	GGNCC	2 cut(s)	228, 403
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	5 cut(s)	36, 141, 159, 309, 347
SfaNI	GCATC	1 cut(s)	205
Sfr303I	CCGCGG	1 cut(s)	60
SgrBI	CCGCGG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	381
SsiI	CCGC	8 cut(s)	22, 41, 57, 59, 122, 186, 326, 354
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	399
TaiI	ACGT	4 cut(s)	36, 141, 159, 309
TaqI	TCGA	2 cut(s)	87, 371
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	334, 395
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.