Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0024615

Physical Location & Seq

Genomic Coordinates Reverse (-)

5921058 .. 5923107

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG076100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTAGCTCATCGTGTGGCACATAAGCTATGGATTCAATCACGCAGGCCACTGGCGCTTGCGCTCCACTCGCGGATAGCCGACGTGTTCGCGGTGGATATTCACCCCGCGGCGAGGATCGGAAAAGGGGTGCTGTTCGACCACGCGACGGGAGTGGTGGTCGGGGAGACGGCGGTGATAGGAAACAACGTCTCCATACTCCACCACGTGACGCTTGGAGGGACAGGAAAGGCCGGCGGAGACAGGCATCCGAAGATCGGCGACGGGGTACTTATCGGGGCCGGTGCAACGATATTGGGGAATGTGAAGATTGGAGAGGGTGCGAAGATTGGGGCTGGGTCGGTGGTGCTTATTGACGTGCCGGCGAGGACTACGGCGGTGGGGAATCCTGCGAGGTTGGTTGGCGGGAAGGAGAAGCCGTCGAAGCATGAGGATGTGCCTGGAGAATCCATGGACCATACTTCGTTTATATCGGAGTGGTCTGACTATATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

165

Amino Acids

17.13

Weight (kDa)

9.05

Isoelectric Point (pI)

22.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	83 - 116	5.5e-12	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024615)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g06020
rosa_multiflora	Rmu_co8121202.1_g000001
rosa_samantha	Rh2DG076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	73, 92, 110, 146
AciI	CCGC	8 cut(s)	73, 92, 108, 110, 173, 237, 377, 405
AclWI	GGATC	1 cut(s)	125
AcvI	CACGTG	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	114, 148, 257
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	38
AjiI	CACGTC	2 cut(s)	85, 358
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	2 cut(s)	8, 28
AluI	AGCT	2 cut(s)	8, 28
Alw26I	GTCTC	3 cut(s)	161, 196, 234
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	3 cut(s)	47, 231, 279
AspLEI	GCGC	2 cut(s)	58, 64
AspS9I	GGNCC	2 cut(s)	279, 454
AsuHPI	GGTGA	2 cut(s)	95, 187
AvaII	GGWCC	1 cut(s)	454
BbrPI	CACGTG	1 cut(s)	208
BceAI	ACGGC	3 cut(s)	186, 390, 403
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	161, 196, 234
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	454
BmgBI	CACGTC	2 cut(s)	85, 358
BmgT120I	GGNCC	2 cut(s)	279, 454
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	108, 450
BsaXI	ACNNNNNCTCC	6 cut(s)	144, 174, 176, 206, 404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 148, 257
Bse118I	RCCGGY	3 cut(s)	233, 281, 361
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	108, 450
BseGI	GGATG	2 cut(s)	247, 439
BseLI	CCNNNNNNNGG	3 cut(s)	114, 148, 257
BseNI	ACTGG	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	4 cut(s)	73, 92, 110, 146
BshFI	GGCC	3 cut(s)	49, 233, 281
BsiSI	CCGG	3 cut(s)	234, 282, 362
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	114, 148, 257
BsmAI	GTCTC	3 cut(s)	161, 196, 234
BsmBI	CGTCTC	2 cut(s)	161, 196
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	49, 233, 281
Bsp143I	GATC	2 cut(s)	117, 255
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	8 cut(s)	73, 92, 108, 110, 173, 237, 377, 405
BspANI	GGCC	3 cut(s)	49, 233, 281
BspFNI	CGCG	4 cut(s)	73, 92, 110, 146
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	125
BsrFI	RCCGGY	3 cut(s)	233, 281, 361
BsrI	ACTGG	1 cut(s)	57
BssAI	RCCGGY	3 cut(s)	233, 281, 361
BssECI	CCNNGG	2 cut(s)	108, 450
BssMI	GATC	2 cut(s)	117, 255
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	4 cut(s)	47, 60, 235, 363
BstDSI	CCRYGG	2 cut(s)	108, 450
BstF5I	GGATG	2 cut(s)	247, 439
BstFNI	CGCG	4 cut(s)	73, 92, 110, 146
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 64
BstKTI	GATC	2 cut(s)	120, 258
BstMAI	GTCTC	3 cut(s)	161, 196, 234
BstMBI	GATC	2 cut(s)	117, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 70, 424
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	4 cut(s)	73, 92, 110, 146
BsuRI	GGCC	3 cut(s)	49, 233, 281
BtgI	CCRYGG	2 cut(s)	108, 450
BtrI	CACGTC	2 cut(s)	85, 358
BtsCI	GGATG	2 cut(s)	247, 439
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	47, 60, 235, 363
CfoI	GCGC	2 cut(s)	58, 64
Cfr10I	RCCGGY	3 cut(s)	233, 281, 361
Cfr13I	GGNCC	2 cut(s)	279, 454
Cfr42I	CCGCGG	1 cut(s)	111
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	2 cut(s)	428, 451
CviJI	RGCY	8 cut(s)	8, 28, 49, 80, 233, 281, 335, 418
CviKI_1	RGCY	8 cut(s)	8, 28, 49, 80, 233, 281, 335, 418
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	2 cut(s)	119, 257
DpnII	GATC	2 cut(s)	117, 255
DraIII	CACNNNGTG	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	454
Eco72I	CACGTG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	2 cut(s)	161, 196
FaeI	CATG	2 cut(s)	431, 454
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	427, 450
FauI	CCCGC	2 cut(s)	115, 398
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	2 cut(s)	234, 446
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	2 cut(s)	57, 63
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	49, 233, 281
HapII	CCGG	3 cut(s)	234, 282, 362
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	2 cut(s)	58, 64
Hin1II	CATG	2 cut(s)	431, 454
Hin6I	GCGC	2 cut(s)	56, 62
HinP1I	GCGC	2 cut(s)	56, 62
HinfI	GANTC	3 cut(s)	34, 385, 446
HpaII	CCGG	3 cut(s)	234, 282, 362
HphI	GGTGA	2 cut(s)	95, 187
Hpy188I	TCNGA	4 cut(s)	122, 252, 475, 484
Hpy99I	CGWCG	4 cut(s)	86, 151, 266, 424
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	4 cut(s)	84, 189, 207, 357
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 70, 424
HpySE526I	ACGT	4 cut(s)	84, 189, 207, 357
Hsp92II	CATG	2 cut(s)	431, 454
HspAI	GCGC	2 cut(s)	56, 62
KroI	GCCGGC	2 cut(s)	233, 361
KroNI	GCCGGC	2 cut(s)	235, 363
KspI	CCGCGG	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	117, 255
LmnI	GCTCC	1 cut(s)	69
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	4 cut(s)	84, 189, 207, 357
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	119, 257
MboI	GATC	2 cut(s)	117, 255
MboII	GAAGA	3 cut(s)	265, 319, 337
MnlI	CCTC	6 cut(s)	108, 212, 310, 360, 387, 424
MroNI	GCCGGC	2 cut(s)	233, 361
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	3 cut(s)	234, 282, 362
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	4 cut(s)	73, 92, 110, 146
MwoI	GCNNNNNNNGC	3 cut(s)	55, 70, 424
NaeI	GCCGGC	2 cut(s)	235, 363
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	117, 255
NgoMIV	GCCGGC	2 cut(s)	233, 361
NlaIII	CATG	2 cut(s)	431, 454
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	208
PdiI	GCCGGC	2 cut(s)	235, 363
PfeI	GAWTC	3 cut(s)	34, 385, 446
PkrI	GCNGC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	208
PmlI	CACGTG	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	439
PspCI	CACGTG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	279, 454
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	432
SacII	CCGCGG	1 cut(s)	111
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	117, 255
Sau96I	GGNCC	2 cut(s)	279, 454
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	7 cut(s)	10, 30, 87, 192, 210, 360, 398
SfaNI	GCATC	1 cut(s)	256
Sfr303I	CCGCGG	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	432
SsiI	CCGC	8 cut(s)	73, 92, 108, 110, 173, 237, 377, 405
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	450
TaiI	ACGT	4 cut(s)	87, 192, 210, 360
TaqI	TCGA	2 cut(s)	138, 422
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	34, 385, 446
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.