pycom02g08440
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0024617
Physical Location & Seq
Forward (+)
5875701 .. 5877573
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08440.3

Sequence Viewer

Length: 999 bp
ATGATCGATCGTGTATTTGATGGTAATGCCACCCAAGAGGATGTCTTTGAAGATACAAGGTATTTGGTACAATCTGCAGTTGATGGGTATAATGTGTGCATATTTGCATATGGGCAAACCGGTTCCGGAAAGACATATACCATCTACGGTTCAGAAACTAATCCTGGACTTACTCCACGAGCTACTGCAGAGTTGTTTAAAATATTGAGGCGAGAGAACAACAAATTCTCATTTTCATTAAAGGCATACATGTTGGAGTTGTATCAAGATACACTTGTAGACCTTCTCTTACCGAAAAATGCCAAGCGTTTGAAATTGGAGATCAAGAAAGATTCAAAGGGTATGGTCTCGGTTGAGAATGTAACTGTTCTCTCAATTTCATCACATGAAGAACTGAAAAGTGTCATTCAAAGAGGTTCTGAACGAAGGCATACTGCTGGAACTCAGATGAACGATGAAAGTTCAAGATCACACCTCATAGTTTCTGTTGTCATCGAAAGTACCAACCTTCAAACCCAATCTGTTGCAAGAGGAAAGCTAAGTTTTGTGGATCTTGCTGGTTCGGAAAGAATAAAGAAGTCGGGCTCTTCAGGTAGTCAACTTAAAGAAGCGCAAAGCATCAACAAGTCGCTTTCAGCACTTGGGGATGTTATTAGTTCTTTATCTTCCGGTGGTCAACACATACCGTACAGGAACCATAAGTTAACGATGCTAATGAGTGATTCACTTGGTGGTAACGCGAAGACGCTTATGTTTGTAAACGTTTCTCCTGCTGAATCAAATGTGGACGAGACATACAATTCTCTAATGTATGCATCAAGAGTCCGATCAATCGTGAATGATCCAAGCAAAAACGTTTCTTCAAAAGAAATCATGCGGCTGAAGAAGTTGGTTGCATATTGGATAGAACAAGCAGGCAAGAGAGGAGACGACGAAGATTTGGAAGAAATTCAGGATGAGCGACCGGTGAAAGATAGAGACGGCCGCCATTCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001578 GO:0003002 GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005881 GO:0005938 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009524 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0015630 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0030554 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0036094 GO:0042623 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043531 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045165 GO:0045168 GO:0046872 GO:0046983 GO:0048468 GO:0048629 GO:0048856 GO:0048869 GO:0051015 GO:0055028 GO:0071840 GO:0071944 GO:0072686 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901265 GO:1901363 GO:1990939
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FERM_M FERM_N Kinesin MyTH4

Protein Analysis

333

Amino Acids

36.92

Weight (kDa)

7.76

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024617)

Species Orthologous Gene IDs
pyrus_communis pycom02g08440 pycom15g20110
rosa_samantha Rh2AG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 740
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 877, 985
AclI AACGTT 2 cut(s) 762, 855
AclWI GGATC 2 cut(s) 558, 836
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 2 cut(s) 224, 948
AcuI CTGAAG 2 cut(s) 573, 902
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 3 cut(s) 69, 502, 689
AflIII ACRYGT 1 cut(s) 249
AgeI ACCGGT 2 cut(s) 119, 964
AgsI TTSAA 7 cut(s) 50, 313, 336, 410, 465, 512, 864
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 2 cut(s) 182, 538
AluI AGCT 2 cut(s) 182, 538
Alw26I GTCTC 4 cut(s) 352, 785, 921, 972
AlwI GGATC 2 cut(s) 558, 836
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 982
ApoI RAATTY 2 cut(s) 224, 948
AsiGI ACCGGT 2 cut(s) 119, 964
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 1 cut(s) 613
AsuHPI GGTGA 1 cut(s) 979
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BanII GRGCYC 1 cut(s) 587
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 749
BccI CCATC 3 cut(s) 14, 77, 149
BceAI ACGGC 1 cut(s) 997
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 4 cut(s) 352, 785, 921, 972
BfmI CTRYAG 2 cut(s) 75, 186
BisI GCNGC 2 cut(s) 878, 985
BlsI GCNGC 2 cut(s) 879, 986
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 124, 695
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 3 cut(s) 627, 699, 824
BpiI GAAGAC 1 cut(s) 749
Bsa29I ATCGAT 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 352
BsaWI WCCGGW 4 cut(s) 119, 125, 668, 964
Bse118I RCCGGY 2 cut(s) 119, 964
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 6
BseGI GGATG 3 cut(s) 46, 652, 961
BseMII CTCAG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 939
BseX3I CGGCCG 1 cut(s) 982
Bsh1236I CGCG 1 cut(s) 740
Bsh1285I CGRYCG 3 cut(s) 10, 965, 985
BshFI GGCC 1 cut(s) 984
BshTI ACCGGT 2 cut(s) 119, 964
BshVI ATCGAT 1 cut(s) 6
BsiEI CGRYCG 3 cut(s) 10, 965, 985
BsiSI CCGG 4 cut(s) 120, 126, 669, 965
BsmAI GTCTC 4 cut(s) 352, 785, 921, 972
BsmBI CGTCTC 2 cut(s) 921, 972
BsnI GGCC 1 cut(s) 984
Bso31I GGTCTC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
BspACI CCGC 2 cut(s) 877, 985
BspANI GGCC 1 cut(s) 984
BspCNI CTCAG 1 cut(s) 457
BspDI ATCGAT 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 125
BspFNI CGCG 1 cut(s) 740
BspLI GGNNCC 2 cut(s) 124, 695
BspMAI CTGCAG 2 cut(s) 79, 190
BspPI GGATC 2 cut(s) 558, 836
BspQI GCTCTTC 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 352
BsrFI RCCGGY 2 cut(s) 119, 964
BssAI RCCGGY 2 cut(s) 119, 964
BssMI GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 149, 367, 687
Bst6I CTCTTC 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 916
BstDEI CTNAG 2 cut(s) 444, 539
BstF5I GGATG 3 cut(s) 46, 652, 961
BstFNI CGCG 1 cut(s) 740
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 7 cut(s) 6, 10, 324, 470, 553, 830, 844
BstMAI GTCTC 4 cut(s) 352, 785, 921, 972
BstMBI GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
BstMCI CGRYCG 3 cut(s) 10, 965, 985
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 2 cut(s) 75, 186
BstUI CGCG 1 cut(s) 740
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BstZI CGGCCG 1 cut(s) 982
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 1 cut(s) 984
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 3 cut(s) 46, 652, 961
Cac8I GCNNGC 1 cut(s) 916
CfoI GCGC 1 cut(s) 613
Cfr10I RCCGGY 2 cut(s) 119, 964
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 754
Csp6I GTAC 3 cut(s) 68, 501, 688
CspAI ACCGGT 2 cut(s) 119, 964
CviAII CATG 4 cut(s) 250, 386, 874, 994
CviJI RGCY 5 cut(s) 182, 538, 585, 880, 984
CviKI_1 RGCY 5 cut(s) 182, 538, 585, 880, 984
CviQI GTAC 3 cut(s) 68, 501, 688
DdeI CTNAG 2 cut(s) 444, 539
DpnI GATC 7 cut(s) 5, 9, 323, 469, 552, 829, 843
DpnII GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
DraI TTTAAA 1 cut(s) 199
DraIII CACNNNGTG 1 cut(s) 731
EaeI YGGCCR 1 cut(s) 982
EagI CGGCCG 1 cut(s) 982
Eam1104I CTCTTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 982
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 1 cut(s) 352
Eco52I CGGCCG 1 cut(s) 982
Eco57I CTGAAG 2 cut(s) 573, 902
EcoRII CCWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 587
Esp3I CGTCTC 2 cut(s) 921, 972
FaeI CATG 4 cut(s) 253, 389, 877, 997
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 4 cut(s) 249, 385, 873, 993
FauNDI CATATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 878, 985
FokI GGATG 3 cut(s) 53, 659, 968
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 2 cut(s) 878, 985
GlaI GCGC 1 cut(s) 612
GluI GCNGC 2 cut(s) 878, 985
HaeIII GGCC 1 cut(s) 984
HapII CCGG 4 cut(s) 120, 126, 669, 965
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 613
Hin1II CATG 4 cut(s) 253, 389, 877, 997
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 3 cut(s) 599, 677, 705
HindII GTYRAC 3 cut(s) 599, 677, 705
HinfI GANTC 4 cut(s) 332, 722, 776, 822
HpaI GTTAAC 1 cut(s) 705
HpaII CCGG 4 cut(s) 120, 126, 669, 965
HphI GGTGA 1 cut(s) 979
Hpy166II GTNNAC 6 cut(s) 280, 599, 677, 705, 760, 787
Hpy188I TCNGA 5 cut(s) 154, 421, 447, 565, 827
Hpy188III TCNNGA 7 cut(s) 126, 266, 325, 465, 819, 835, 953
Hpy8I GTNNAC 6 cut(s) 280, 599, 677, 705, 760, 787
Hpy99I CGWCG 1 cut(s) 935
HpyAV CCTTC 3 cut(s) 293, 420, 518
HpyCH4III ACNGT 3 cut(s) 149, 367, 687
HpyCH4IV ACGT 2 cut(s) 762, 855
HpyCH4V TGCA 7 cut(s) 77, 99, 107, 188, 527, 815, 896
HpyF3I CTNAG 2 cut(s) 444, 539
HpySE526I ACGT 2 cut(s) 762, 855
Hsp92II CATG 4 cut(s) 253, 389, 877, 997
HspAI GCGC 1 cut(s) 611
Kpn2I TCCGGA 1 cut(s) 125
KspAI GTTAAC 1 cut(s) 705
Kzo9I GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
LguI GCTCTTC 1 cut(s) 592
LweI GCATC 3 cut(s) 627, 699, 824
MaeII ACGT 2 cut(s) 762, 855
MaeIII GTNAC 2 cut(s) 361, 734
MalI GATC 7 cut(s) 5, 9, 323, 469, 552, 829, 843
MboI GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
MboII GAAGA 9 cut(s) 62, 401, 579, 657, 754, 852, 895, 947, 956
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 5 cut(s) 224, 314, 375, 799, 948
MlyI GAGTC 1 cut(s) 831
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 6 cut(s) 31, 201, 407, 485, 524, 917
Mph1103I ATGCAT 1 cut(s) 817
MroI TCCGGA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 4 cut(s) 198, 239, 603, 704
MspI CCGG 4 cut(s) 120, 126, 669, 965
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 740
NdeI CATATG 1 cut(s) 109
NdeII GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
NlaIII CATG 4 cut(s) 253, 389, 877, 997
NlaIV GGNNCC 2 cut(s) 124, 695
NsiI ATGCAT 1 cut(s) 817
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 3 cut(s) 332, 722, 776
PfoI TCCNGGA 1 cut(s) 163
PinAI ACCGGT 2 cut(s) 119, 964
PkrI GCNGC 2 cut(s) 879, 986
Ple19I CGATCG 1 cut(s) 10
PleI GAGTC 1 cut(s) 830
PpsI GAGTC 1 cut(s) 830
PscI ACATGT 1 cut(s) 249
Psp1406I AACGTT 2 cut(s) 762, 855
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 124, 695
PstI CTGCAG 2 cut(s) 79, 190
PsuI RGATCY 1 cut(s) 550
PvuI CGATCG 1 cut(s) 10
RsaI GTAC 3 cut(s) 69, 502, 689
RsaNI GTAC 3 cut(s) 68, 501, 688
SapI GCTCTTC 1 cut(s) 592
SaqAI TTAA 4 cut(s) 198, 239, 603, 704
SatI GCNGC 2 cut(s) 878, 985
Sau3AI GATC 7 cut(s) 3, 7, 321, 467, 550, 827, 841
SchI GAGTC 1 cut(s) 831
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 3 cut(s) 627, 699, 824
SfcI CTRYAG 2 cut(s) 75, 186
Sse9I AATT 5 cut(s) 224, 314, 375, 799, 948
SsiI CCGC 2 cut(s) 877, 985
SspI AATATT 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 149, 367, 687
TaiI ACGT 2 cut(s) 765, 858
TaqI TCGA 2 cut(s) 6, 495
TasI AATT 5 cut(s) 224, 314, 375, 799, 948
TauI GCSGC 2 cut(s) 880, 987
TfiI GAWTC 3 cut(s) 332, 722, 776
Tru1I TTAA 4 cut(s) 198, 239, 603, 704
Tru9I TTAA 4 cut(s) 198, 239, 603, 704
TspDTI ATGAA 5 cut(s) 225, 369, 402, 464, 471
XapI RAATTY 2 cut(s) 224, 948
XceI RCATGY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 948
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.