Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0022532

Physical Location & Seq

Genomic Coordinates Reverse (-)

15255066 .. 15257350

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGGAATTACAACAGAGAATTCAAAGAGTTATTGATAAATGGGGGCCAAATGGAAGACAGCCTTCAATGACTATATATGAAGAGGAAATGGGCAAAATTAGGAAGCACATTGTTGATTTCCACGGCGAGATGGTGCTTTTGGTGAACTACAGCAACATCAAATACACAGGTAGTCCATGGCTGATGAGGCTAATTAACAAGCTCACTCCAGCCTCCACTTCCCATTCTTTTACTTCTAATAGGTCATCTACATCTCAAAAGCGCATGGGTGACTACGCTACTCGAAATAGGTTGGTTCGGTTTCGGTTTTGGTGGCTAGAGGTTTCGAACCTGTGGAAATTTTCAGGTCGACGGGCCGAGGGCCCACTCCAACAACACCGATACTGTCCCCACTTAACCACCTGCACAATCTTCAGGTGGGTATTTCTATTTAAAGCACTCTTCTCTTCTCCCTCTTGGAAATTTTCAGGTCGACGGGCCGAGGGCCCACTCCAACAACACCGATACTGTCCCCACTTAACCACCTGCACAATCTTCAGGTGTGGGGTTTTATCACAAAAGGCCTCGGTGTTAATTAGAGAGGGGTATTTCTATTTAAAGCACTCTTCTCTTCTCCCTCTGTCCGATGTGGGACTGGGGGTTCCAACAGAACCCCTTACCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

223

Amino Acids

25.93

Weight (kDa)

10.14

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022532)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g17370 pycom07g08870 pycom11g22440 pycom17g26310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	413, 536
Acc36I	ACCTGC	2 cut(s)	413, 536
AccI	GTMKAC	2 cut(s)	352, 475
AcsI	RAATTY	3 cut(s)	21, 341, 464
AcuI	CTGAAG	2 cut(s)	400, 523
AgsI	TTSAA	2 cut(s)	26, 69
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AoxI	GGCC	6 cut(s)	47, 357, 364, 480, 487, 564
ApaI	GGGCCC	2 cut(s)	368, 491
ApoI	RAATTY	3 cut(s)	21, 341, 464
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	7 cut(s)	47, 357, 364, 365, 480, 487, 488
AsuHPI	GGTGA	2 cut(s)	157, 284
AsuII	TTCGAA	1 cut(s)	329
BaeGI	GKGCMC	2 cut(s)	368, 491
BanII	GRGCYC	2 cut(s)	368, 491
BbsI	GAAGAC	1 cut(s)	64
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	320, 667
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	2 cut(s)	413, 536
BmgT120I	GGNCC	7 cut(s)	47, 357, 364, 365, 480, 487, 488
BmiI	GGNNCC	4 cut(s)	48, 366, 489, 645
BmrI	ACTGGG	1 cut(s)	647
BmuI	ACTGGG	1 cut(s)	647
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	124, 179, 360, 483, 567
Bse1I	ACTGG	1 cut(s)	642
BseDI	CCNNGG	5 cut(s)	124, 179, 360, 483, 567
BseNI	ACTGG	1 cut(s)	642
BseSI	GKGCMC	2 cut(s)	368, 491
BsgI	GTGCAG	2 cut(s)	391, 514
BshFI	GGCC	6 cut(s)	49, 359, 366, 482, 489, 566
BslFI	GGGAC	3 cut(s)	375, 498, 648
BsmFI	GGGAC	3 cut(s)	375, 498, 648
BsnI	GGCC	6 cut(s)	49, 359, 366, 482, 489, 566
Bsp119I	TTCGAA	1 cut(s)	329
Bsp120I	GGGCCC	2 cut(s)	364, 487
Bsp1286I	GDGCHC	2 cut(s)	368, 491
Bsp19I	CCATGG	1 cut(s)	179
BspANI	GGCC	6 cut(s)	49, 359, 366, 482, 489, 566
BspLI	GGNNCC	4 cut(s)	48, 366, 489, 645
BspMI	ACCTGC	2 cut(s)	413, 536
BspT104I	TTCGAA	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	5 cut(s)	124, 179, 360, 483, 567
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	389, 512
Bst6I	CTCTTC	5 cut(s)	78, 449, 454, 613, 618
BstBI	TTCGAA	1 cut(s)	329
BstDSI	CCRYGG	2 cut(s)	124, 179
BstHHI	GCGC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	2 cut(s)	368, 491
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	6 cut(s)	49, 359, 366, 482, 489, 566
BtgI	CCRYGG	2 cut(s)	124, 179
BveI	ACCTGC	2 cut(s)	413, 536
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	7 cut(s)	47, 357, 364, 365, 480, 487, 488
CviAII	CATG	2 cut(s)	180, 268
DraI	TTTAAA	2 cut(s)	436, 600
Eam1104I	CTCTTC	5 cut(s)	78, 449, 454, 613, 618
EarI	CTCTTC	5 cut(s)	78, 449, 454, 613, 618
Eco130I	CCWWGG	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	566
Eco24I	GRGCYC	2 cut(s)	368, 491
Eco57I	CTGAAG	2 cut(s)	400, 523
EcoO109I	RGGNCCY	2 cut(s)	364, 487
EcoRI	GAATTC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	2 cut(s)	368, 491
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	183, 271
FaiI	YATR	5 cut(s)	77, 79, 81, 181, 269
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	3 cut(s)	375, 498, 648
FatI	CATG	2 cut(s)	179, 267
FblI	GTMKAC	2 cut(s)	352, 475
FriOI	GRGCYC	2 cut(s)	368, 491
FspBI	CTAG	2 cut(s)	320, 667
GlaI	GCGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	6 cut(s)	49, 359, 366, 482, 489, 566
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	183, 271
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	2 cut(s)	353, 476
HindII	GTYRAC	2 cut(s)	353, 476
HphI	GGTGA	2 cut(s)	157, 284
Hpy166II	GTNNAC	3 cut(s)	148, 353, 476
Hpy188I	TCNGA	1 cut(s)	628
Hpy8I	GTNNAC	3 cut(s)	148, 353, 476
Hpy99I	CGWCG	2 cut(s)	357, 480
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	389, 512
HpyCH4V	TGCA	3 cut(s)	4, 408, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	183, 271
HspAI	GCGC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	320, 667
MaeIII	GTNAC	1 cut(s)	272
MboII	GAAGA	8 cut(s)	69, 95, 406, 436, 441, 529, 600, 605
MhlI	GDGCHC	2 cut(s)	368, 491
MluCI	AATT	7 cut(s)	8, 21, 99, 195, 341, 464, 576
MmeI	TCCRAC	2 cut(s)	397, 520
MseI	TTAA	6 cut(s)	198, 398, 435, 521, 575, 599
MwoI	GCNNNNNNNGC	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	179
NlaIII	CATG	2 cut(s)	183, 271
NlaIV	GGNNCC	4 cut(s)	48, 366, 489, 645
NmeAIII	GCCGAG	2 cut(s)	385, 508
NmuCI	GTSAC	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	329
PaqCI	CACCTGC	2 cut(s)	413, 536
PceI	AGGCCT	1 cut(s)	566
PspN4I	GGNNCC	4 cut(s)	48, 366, 489, 645
PspOMI	GGGCCC	2 cut(s)	364, 487
PspPI	GGNCC	7 cut(s)	47, 357, 364, 365, 480, 487, 488
SalI	GTCGAC	2 cut(s)	351, 474
SaqAI	TTAA	6 cut(s)	198, 398, 435, 521, 575, 599
Sau96I	GGNCC	7 cut(s)	47, 357, 364, 365, 480, 487, 488
SduI	GDGCHC	2 cut(s)	368, 491
SfcI	CTRYAG	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	329
Sse9I	AATT	7 cut(s)	8, 21, 99, 195, 341, 464, 576
SseBI	AGGCCT	1 cut(s)	566
SspMI	CTAG	2 cut(s)	320, 667
StuI	AGGCCT	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	389, 512
TaqI	TCGA	4 cut(s)	286, 329, 352, 475
TasI	AATT	7 cut(s)	8, 21, 99, 195, 341, 464, 576
Tru1I	TTAA	6 cut(s)	198, 398, 435, 521, 575, 599
Tru9I	TTAA	6 cut(s)	198, 398, 435, 521, 575, 599
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	96
XapI	RAATTY	3 cut(s)	21, 341, 464
XmiI	GTMKAC	2 cut(s)	352, 475
XspI	CTAG	2 cut(s)	320, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.