pycom11g22440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0022532
Physical Location & Seq
Forward (+)
25459255 .. 25459668
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22440.1

Sequence Viewer

Length: 414 bp
ATGGGGAGTAGCCCAAGACCATATAAGCACATAGCAAACCTTGTCCCTCACCGATGTGGGACAACTCTCAACACGCCCCCGCACGTGTGGCGGATTTTCAAGCCTACACGTGGACAACAACTGGGTGACGTGGAGCGCGTGTGGCCGTTTGGCTTCACACGAGGACAACCCGCTCTGATACCATGTGGAAAATTTTCAGGTCGACGGGCCGAGGGCCCACTCCAACAACACCGATATTGTCCCCACTTAACCACTTGCACAATCCTCAAGTGTGGGGTTTTATCACAAAAGACCTCAGTGTTAATTAGAGAGGGGTATTTCTATTTAAAGCACTCTTCTCTTCTCCATCTGTCCGATGTGGGACTGGGGGTTCCAACATTATGTGAGCTGTTGAAGAAGTTTGGGCATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.4

Weight (kDa)

9.99

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022532)

Species Orthologous Gene IDs
pyrus_communis pycom02g17370 pycom07g08870 pycom11g22440 pycom17g26310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 202
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 80, 91, 171
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 1 cut(s) 191
AcvI CACGTG 2 cut(s) 85, 110
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 2 cut(s) 84, 107
AgsI TTSAA 2 cut(s) 100, 394
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 54
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
AoxI GGCC 3 cut(s) 143, 207, 214
ApaI GGGCCC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 3 cut(s) 207, 214, 215
AsuHPI GGTGA 2 cut(s) 41, 137
BaeGI GKGCMC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 218
BauI CACGAG 1 cut(s) 159
BbrPI CACGTG 2 cut(s) 85, 110
BccI CCATC 1 cut(s) 354
BceAI ACGGC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 207, 214, 215
BmiI GGNNCC 2 cut(s) 216, 372
BmrI ACTGGG 2 cut(s) 131, 374
BmuI ACTGGG 2 cut(s) 131, 374
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 2 cut(s) 85, 110
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 126, 369
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 126, 369
BseSI GKGCMC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 145, 209, 216
BslFI GGGAC 4 cut(s) 29, 73, 225, 375
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 4 cut(s) 29, 73, 225, 375
BsnI GGCC 3 cut(s) 145, 209, 216
Bsp120I GGGCCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 3 cut(s) 80, 91, 171
BspANI GGCC 3 cut(s) 145, 209, 216
BspCNI CTCAG 1 cut(s) 308
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 216, 372
BsrBI CCGCTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 126, 369
BssECI CCNNGG 1 cut(s) 210
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 340, 345
BstBAI YACGTR 2 cut(s) 85, 110
BstDEI CTNAG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 88, 142
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 1 cut(s) 138
BsuRI GGCC 3 cut(s) 145, 209, 216
BtrI CACGTC 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 303
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 3 cut(s) 207, 214, 215
CviAII CATG 1 cut(s) 183
CviJI RGCY 7 cut(s) 12, 103, 145, 153, 209, 216, 388
CviKI_1 RGCY 7 cut(s) 12, 103, 145, 153, 209, 216, 388
DdeI CTNAG 1 cut(s) 295
DraI TTTAAA 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 340, 345
EarI CTCTTC 2 cut(s) 340, 345
EciI GGCGGA 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 218
Eco72I CACGTG 2 cut(s) 85, 110
EcoO109I RGGNCCY 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 1 cut(s) 186
FaiI YATR 6 cut(s) 22, 24, 32, 184, 382, 408
FaqI GGGAC 4 cut(s) 29, 73, 225, 375
FatI CATG 1 cut(s) 182
FauI CCCGC 2 cut(s) 87, 178
FblI GTMKAC 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 218
GlaI GCGC 1 cut(s) 137
HaeIII GGCC 3 cut(s) 145, 209, 216
HhaI GCGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 186
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 203
HindII GTYRAC 1 cut(s) 203
HphI GGTGA 2 cut(s) 41, 137
Hpy166II GTNNAC 2 cut(s) 113, 203
Hpy188I TCNGA 2 cut(s) 177, 355
Hpy8I GTNNAC 2 cut(s) 113, 203
Hpy99I CGWCG 1 cut(s) 207
HpyCH4IV ACGT 3 cut(s) 84, 109, 129
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 142
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 3 cut(s) 84, 109, 129
Hsp92II CATG 1 cut(s) 186
HspAI GCGC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 107, 183, 350
MaeII ACGT 3 cut(s) 84, 109, 129
MaeIII GTNAC 1 cut(s) 125
MbiI CCGCTC 1 cut(s) 173
MboII GAAGA 3 cut(s) 327, 332, 406
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 2 cut(s) 191, 303
MmeI TCCRAC 2 cut(s) 247, 398
MnlI CCTC 6 cut(s) 57, 155, 205, 275, 304, 304
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 3 cut(s) 248, 302, 326
MslI CAYNNNNRTG 1 cut(s) 54
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 88, 142
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 216, 372
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 193
PmaCI CACGTG 2 cut(s) 85, 110
PmlI CACGTG 2 cut(s) 85, 110
Ppu21I YACGTR 2 cut(s) 85, 110
PspCI CACGTG 2 cut(s) 85, 110
PspN4I GGNNCC 2 cut(s) 216, 372
PspOMI GGGCCC 1 cut(s) 214
PspPI GGNCC 3 cut(s) 207, 214, 215
RseI CAYNNNNRTG 1 cut(s) 54
SalI GTCGAC 1 cut(s) 201
SaqAI TTAA 3 cut(s) 248, 302, 326
Sau96I GGNCC 3 cut(s) 207, 214, 215
SduI GDGCHC 1 cut(s) 218
SetI ASST 7 cut(s) 42, 87, 112, 132, 202, 296, 390
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 191, 303
SsiI CCGC 3 cut(s) 80, 91, 171
TaiI ACGT 3 cut(s) 87, 112, 132
TaqI TCGA 1 cut(s) 202
TasI AATT 2 cut(s) 191, 303
Tru1I TTAA 3 cut(s) 248, 302, 326
Tru9I TTAA 3 cut(s) 248, 302, 326
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspRI CASTG 1 cut(s) 303
XapI RAATTY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.