Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0021878

Physical Location & Seq

Genomic Coordinates Forward (+)

22961958 .. 22963106

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATGCAAGAGTGCAAAGAAATAATTCCAAACCATGGAACTTGGGTAAGCATTCTACCAGCATATACCCATATAGGAGTCTTGCAACAAGGGATGAAAGTTCATGGACGAGTGATTAAGAACAGTCTCTATTCGGATGTATTCGTGGGAACCTTCTTGAATGATATGTATGGAAAATGCGGGAGACTAGATGATGCATTGTTGTTGTTCTCCCAAGTTCCCAGGAAGAGTTCGGTCCTTTGTAATGCTTTAATTTCATGTCATGGAGTTAACGGGTATGGTGAGAAGGGTCTGAAGCTATTCAATGATATGCTAGATGCAGGGGTGAAGCCAGATCATGTAACCTTTGTATCTTTAATGGCAGCCTGTAGCCATTCAGGTTTGGTTGATGAAGGTCAATCGTACCTTCATATGATGCAGGAACAATATGGCATCAAGCCTACTTTGAAGCACAATGGCTGCATGGTTGATTTGCTTGGTAGAGCTGCGCATTTGAACAAGGCATATAGTTTTGTAGAGAATATTTCCAAACGGCCTGATGCTTCTGTGTGGGGTGCTCTACTCGGTGCTTGTAGAATATATGGAAATGTTGAGTTGGGCAAGATTGCTTCTGAACGCTTGTTTGAAGTTGATCCAGAGAATGTGGGTTACTATGTTTTGTTGTCCAACATTTATGCAAATTTCGGGAAATGGGAAGGTGTGGAGAAAGTGAGATCTCTAGCTAGAAATCGAGGACTTACGAAGACTCCAGGATGGACCTCAATTGAAGTTAACAATAACGTTGAGGTCTTTTATACTGCAAACCAATCACATCCAAAATGCGAGGAAATATACAAGAAGTTGAGGGATCTAACTGCCAGAATGAAGAGCCTTGGTTATGTTCCTGACTTTAGCTTTGTGCTGCAGGATTTTGAGGATGACGAGAAAGAACACATCCTCAACAGTCACAGCGAGAGGTTAGGAATTGCATTCGGACTCATCAGCACGCCCCCGAAATCTCCCATTCGGATCTTCAAGAATTTGCGGGTTTGCGGGGATTGCCACAACGCAACGAAGTTCATATCGGTAATTACGGAGAGGGAGATCATTGTGAGGGATTCTAACCGTTTTCATCATTTCAAGGATGGAACTTGCTCTTGTGGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

383

Amino Acids

42.81

Weight (kDa)

7.58

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	77 - 124	6.5e-11	PPR repeat family
E_motif	PF20431	194 - 256	4.8e-20	E motif
DYW_deaminase	PF14432	292 - 382	5.8e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06540
pyrus_communis	pycom02g24860
rosa_rugosa	Rorug05G0571600
rosa_samantha	Rh2CG357000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	35
AciI	CCGC	3 cut(s)	180, 1024, 1032
AclI	AACGTT	1 cut(s)	780
AclWI	GGATC	3 cut(s)	626, 855, 1016
AcsI	RAATTY	2 cut(s)	679, 1018
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	8 cut(s)	160, 304, 448, 496, 626, 767, 1015, 1120
AjnI	CCWGG	2 cut(s)	221, 748
AluBI	AGCT	4 cut(s)	298, 485, 722, 894
AluI	AGCT	4 cut(s)	298, 485, 722, 894
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	131, 178
AlwI	GGATC	3 cut(s)	626, 855, 1016
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	4 cut(s)	362, 459, 485, 901
ApoI	RAATTY	2 cut(s)	679, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
Asp700I	GAANNNNTTC	2 cut(s)	24, 299
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	235, 756
AsuHPI	GGTGA	2 cut(s)	293, 337
AvaII	GGWCC	2 cut(s)	235, 756
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BbsI	GAAGAC	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	4 cut(s)	374, 446, 472, 888
BccI	CCATC	2 cut(s)	747, 1118
BceAI	ACGGC	1 cut(s)	548
BciT130I	CCWGG	2 cut(s)	223, 750
BcoDI	GTCTC	2 cut(s)	131, 178
BfaI	CTAG	4 cut(s)	188, 314, 719, 723
BfmI	CTRYAG	2 cut(s)	367, 902
BglII	AGATCT	1 cut(s)	713
BisI	GCNGC	4 cut(s)	363, 460, 486, 902
BlsI	GCNGC	4 cut(s)	364, 461, 487, 903
Bme1390I	CCNGG	2 cut(s)	223, 750
Bme18I	GGWCC	2 cut(s)	235, 756
BmgT120I	GGNCC	2 cut(s)	235, 756
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	223, 750
BmsI	GCATC	5 cut(s)	184, 307, 405, 441, 529
BpiI	GAAGAC	1 cut(s)	749
BpmI	CTGGAG	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	34, 221, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	223, 750
BseDI	CCNNGG	3 cut(s)	34, 221, 871
BseGI	GGATG	7 cut(s)	99, 142, 758, 811, 922, 933, 1129
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	374, 446, 472, 888
BshFI	GGCC	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	131, 178
BsmI	GAATGC	2 cut(s)	51, 968
BsnI	GGCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	3 cut(s)	180, 1024, 1032
BspANI	GGCC	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	906
BspPI	GGATC	3 cut(s)	626, 855, 1016
BspQI	GCTCTTC	1 cut(s)	860
BssECI	CCNNGG	3 cut(s)	34, 221, 871
BssMI	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
BssT1I	CCWWGG	2 cut(s)	34, 871
Bst2UI	CCWGG	2 cut(s)	223, 750
Bst4CI	ACNGT	3 cut(s)	125, 944, 1106
Bst6I	CTCTTC	2 cut(s)	221, 860
BstC8I	GCNNGC	1 cut(s)	986
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	7 cut(s)	99, 142, 758, 811, 922, 933, 1129
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	6 cut(s)	337, 634, 716, 850, 1011, 1086
BstMAI	GTCTC	2 cut(s)	131, 178
BstMBI	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
BstMWI	GCNNNNNNNGC	1 cut(s)	1038
BstNI	CCWGG	2 cut(s)	223, 750
BstSCI	CCNGG	2 cut(s)	221, 748
BstSFI	CTRYAG	2 cut(s)	367, 902
BstV1I	GCAGC	4 cut(s)	374, 446, 472, 888
BstV2I	GAAGAC	1 cut(s)	749
BstX2I	RGATCY	3 cut(s)	713, 847, 1008
BstYI	RGATCY	3 cut(s)	713, 847, 1008
BsuRI	GGCC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	7 cut(s)	99, 142, 758, 811, 922, 933, 1129
Cac8I	GCNNGC	1 cut(s)	986
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	235, 756
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	6 cut(s)	35, 104, 258, 263, 338, 463
CviQI	GTAC	1 cut(s)	403
DpnI	GATC	6 cut(s)	336, 633, 715, 849, 1010, 1085
DpnII	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
Eam1104I	CTCTTC	2 cut(s)	221, 860
EarI	CTCTTC	2 cut(s)	221, 860
Eco130I	CCWWGG	2 cut(s)	34, 871
Eco47I	GGWCC	2 cut(s)	235, 756
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	221, 748
EcoT14I	CCWWGG	2 cut(s)	34, 871
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	34, 871
FaeI	CATG	6 cut(s)	38, 107, 261, 266, 341, 466
FatI	CATG	6 cut(s)	34, 103, 257, 262, 337, 462
FauI	CCCGC	3 cut(s)	173, 1017, 1025
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	363, 460, 486, 902
FokI	GGATG	7 cut(s)	106, 149, 765, 798, 920, 929, 1136
Fsp4HI	GCNGC	4 cut(s)	363, 460, 486, 902
FspBI	CTAG	4 cut(s)	188, 314, 719, 723
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	363, 460, 486, 902
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	6 cut(s)	38, 107, 261, 266, 341, 466
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	2 cut(s)	271, 772
HindII	GTYRAC	2 cut(s)	271, 772
HinfI	GANTC	4 cut(s)	78, 745, 975, 1097
HpaI	GTTAAC	2 cut(s)	271, 772
HphI	GGTGA	2 cut(s)	293, 337
Hpy166II	GTNNAC	2 cut(s)	271, 772
Hpy188I	TCNGA	5 cut(s)	136, 294, 613, 974, 1008
Hpy188III	TCNNGA	5 cut(s)	157, 635, 685, 884, 1015
Hpy8I	GTNNAC	2 cut(s)	271, 772
HpyAV	CCTTC	5 cut(s)	163, 280, 386, 416, 689
HpyCH4III	ACNGT	3 cut(s)	125, 944, 1106
HpyCH4IV	ACGT	1 cut(s)	780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1038
HpySE526I	ACGT	1 cut(s)	780
Hsp92II	CATG	6 cut(s)	38, 107, 261, 266, 341, 466
HspAI	GCGC	1 cut(s)	488
KspAI	GTTAAC	2 cut(s)	271, 772
Kzo9I	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
LguI	GCTCTTC	1 cut(s)	860
Lsp1109I	GCAGC	4 cut(s)	374, 446, 472, 888
LweI	GCATC	5 cut(s)	184, 307, 405, 441, 529
MaeI	CTAG	4 cut(s)	188, 314, 719, 723
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	3 cut(s)	340, 647, 944
MalI	GATC	6 cut(s)	336, 633, 715, 849, 1010, 1085
MboI	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
MboII	GAAGA	4 cut(s)	238, 754, 877, 1003
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	3 cut(s)	713, 847, 1008
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	7 cut(s)	24, 252, 679, 762, 963, 1018, 1068
MlyI	GAGTC	3 cut(s)	87, 739, 969
MmeI	TCCRAC	1 cut(s)	690
Mph1103I	ATGCAT	1 cut(s)	199
MroXI	GAANNNNTTC	2 cut(s)	24, 299
MseI	TTAA	6 cut(s)	117, 251, 270, 356, 771, 1147
MspR9I	CCNGG	2 cut(s)	223, 750
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	51, 968
MvaI	CCWGG	2 cut(s)	223, 750
MwoI	GCNNNNNNNGC	1 cut(s)	1038
NcoI	CCATGG	1 cut(s)	34
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
NlaIII	CATG	6 cut(s)	38, 107, 261, 266, 341, 466
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	944
NsbI	TGCGCA	1 cut(s)	489
NsiI	ATGCAT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	860
PctI	GAATGC	2 cut(s)	51, 968
PdmI	GAANNNNTTC	2 cut(s)	24, 299
PfeI	GAWTC	1 cut(s)	1097
PflMI	CCANNNNNTGG	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	4 cut(s)	364, 461, 487, 903
PleI	GAGTC	3 cut(s)	86, 739, 969
PpsI	GAGTC	3 cut(s)	86, 739, 969
Psp1406I	AACGTT	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	221, 748
PspGI	CCWGG	2 cut(s)	221, 748
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	235, 756
PstI	CTGCAG	1 cut(s)	906
PsuI	RGATCY	3 cut(s)	713, 847, 1008
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SapI	GCTCTTC	1 cut(s)	860
SaqAI	TTAA	6 cut(s)	117, 251, 270, 356, 771, 1147
SatI	GCNGC	4 cut(s)	363, 460, 486, 902
Sau3AI	GATC	6 cut(s)	334, 631, 713, 847, 1008, 1083
Sau96I	GGNCC	2 cut(s)	235, 756
SchI	GAGTC	3 cut(s)	87, 739, 969
ScrFI	CCNGG	2 cut(s)	223, 750
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	5 cut(s)	184, 307, 405, 441, 529
SfcI	CTRYAG	2 cut(s)	367, 902
SinI	GGWCC	2 cut(s)	235, 756
Sse9I	AATT	7 cut(s)	24, 252, 679, 762, 963, 1018, 1068
SsiI	CCGC	3 cut(s)	180, 1024, 1032
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	188, 314, 719, 723
StyD4I	CCNGG	2 cut(s)	221, 748
StyI	CCWWGG	2 cut(s)	34, 871
TaaI	ACNGT	3 cut(s)	125, 944, 1106
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	1 cut(s)	730
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	7 cut(s)	24, 252, 679, 762, 963, 1018, 1068
TfiI	GAWTC	1 cut(s)	1097
Tru1I	TTAA	6 cut(s)	117, 251, 270, 356, 771, 1147
Tru9I	TTAA	6 cut(s)	117, 251, 270, 356, 771, 1147
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	4 cut(s)	362, 459, 485, 901
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	8 cut(s)	92, 110, 246, 398, 405, 878, 1048, 1100
TspGWI	ACGGA	1 cut(s)	1088
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	235, 756
XapI	RAATTY	2 cut(s)	679, 1018
XmnI	GAANNNNTTC	2 cut(s)	24, 299
XspI	CTAG	4 cut(s)	188, 314, 719, 723
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.