Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0021878

Physical Location & Seq

Genomic Coordinates Forward (+)

48334703 .. 48335443

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG357000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCAGAAAGAGTATCGAATCAAGCCTGGTTTAAAGCACTACGGCTGCATGGTAGATTTACTTGGTAGAGCTGGGCATTTAGACAAGGCATATAGTTTTATTAAGACTATGCCTGTACAGCCTGATGCTTCTGTTTGGGGGGCACTACTTGGTGCTTGTAGGATACATGGGAATGCTGAATTGGGGAAAATTGCTTCAGAAGGCTTGTTTGAAGTTGATTCGGAGAATGTCGGCTACTATGTTTTGTTGTCAAATATATACGCAACAACCGGGAAATGGGAAGGTGTGGATAAAGTGAGATCTATGGCTAGAAACCGCGGACTGAGGAAGACTCCCGGGTGGAGCTCAATAGAAGTTAACAATAAAGTTGATGTCTTTTATACTCGGAACCAAACGCATCCATTATGCGAACAGATATACCAGAAGTTGAGGGAACTAACTGAGAAAATGAAGAGCCTTGGTTATGTTCCGGACTTCAGCTTTGTGTTGCAGGATGTCGAGGATGACGAGAAAGAGCATATCCTCACGAGTCATAGTGAGAGATTGGCGATTGCTTTTGGAATCATTAGCACGCCTCCTAAAACTCCGATTCGGATCTTCAAGAACCTGAGGGTTTGCGGTGATTGCCACAATGTGACGAAACTCATATCAGTAATTATGGAGAGGGAGATCATTGTGAGGGATTCAAACCGTTTCCACCATTTCAAGGATGGAACTTGCTCATGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

246

Amino Acids

28.02

Weight (kDa)

8.4

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	56 - 118	5.5e-18	E motif
DYW_deaminase	PF14432	154 - 246	1.4e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06540
pyrus_communis	pycom02g24860
rosa_rugosa	Rorug05G0571600
rosa_samantha	Rh2CG357000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	318
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	3 cut(s)	316, 318, 618
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	2 cut(s)	180, 460
AdeI	CACNNNGTG	1 cut(s)	634
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	276, 706
AgsI	TTSAA	4 cut(s)	212, 601, 687, 706
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	71, 345, 480
AluI	AGCT	3 cut(s)	71, 345, 480
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AsuC2I	CCSGG	3 cut(s)	271, 336, 337
AsuHPI	GGTGA	1 cut(s)	632
AvaI	CYCGRG	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	3 cut(s)	271, 336, 337
BfaI	CTAG	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	4 cut(s)	27, 271, 336, 337
BmeT110I	CYCGRG	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	4 cut(s)	27, 271, 336, 337
BmsI	GCATC	2 cut(s)	115, 406
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpuMI	CCSGG	3 cut(s)	271, 336, 337
BsaBI	GATNNNNATC	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	316, 335, 457
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 706
Bse21I	CCTNAGG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	316, 335, 457
BseGI	GGATG	4 cut(s)	397, 499, 508, 715
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	2 cut(s)	276, 706
BseMII	CTCAG	3 cut(s)	314, 432, 599
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	270, 336, 470
BslI	CCNNNNNNNGG	2 cut(s)	276, 706
BsmI	GAATGC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	145, 347
Bsp13I	TCCGGA	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	299, 594, 669
BspACI	CCGC	3 cut(s)	316, 318, 618
BspCNI	CTCAG	3 cut(s)	315, 433, 600
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	602
BspQI	GCTCTTC	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	316, 335, 457
BssMI	GATC	3 cut(s)	299, 594, 669
BssSI	CACGAG	1 cut(s)	526
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	526
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	3 cut(s)	323, 441, 608
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	4 cut(s)	397, 499, 508, 715
BstFNI	CGCG	1 cut(s)	318
BstKTI	GATC	3 cut(s)	302, 597, 672
BstMBI	GATC	3 cut(s)	299, 594, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 624
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	4 cut(s)	25, 269, 334, 335
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	299, 594
BstYI	RGATCY	2 cut(s)	299, 594
Bsu36I	CCTNAGG	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	397, 499, 508, 715
Cac8I	GCNNGC	1 cut(s)	572
Cfr42I	CCGCGG	1 cut(s)	319
Cfr9I	CCCGGG	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	3 cut(s)	49, 167, 723
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	3 cut(s)	323, 441, 608
DpnI	GATC	3 cut(s)	301, 596, 671
DpnII	GATC	3 cut(s)	299, 594, 669
DraI	TTTAAA	1 cut(s)	33
DraIII	CACNNNGTG	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	180, 460
Eco81I	CCTNAGG	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	3 cut(s)	52, 170, 726
FatI	CATG	3 cut(s)	48, 166, 722
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	4 cut(s)	384, 506, 515, 722
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	46
GsaI	CCCAGC	1 cut(s)	75
HapII	CCGG	3 cut(s)	270, 336, 470
Hin1II	CATG	3 cut(s)	52, 170, 726
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	7 cut(s)	18, 218, 331, 529, 561, 589, 683
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	3 cut(s)	270, 336, 470
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	5 cut(s)	199, 223, 387, 588, 594
Hpy188III	TCNNGA	3 cut(s)	470, 526, 601
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	2 cut(s)	194, 275
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4V	TGCA	3 cut(s)	4, 48, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 624
HpyF3I	CTNAG	3 cut(s)	323, 441, 608
Hsp92II	CATG	3 cut(s)	52, 170, 726
Kpn2I	TCCGGA	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	299, 594, 669
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	2 cut(s)	115, 406
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	3 cut(s)	301, 596, 671
MboI	GATC	3 cut(s)	299, 594, 669
MboII	GAAGA	3 cut(s)	340, 463, 589
MflI	RGATCY	2 cut(s)	299, 594
MhlI	GDGCHC	2 cut(s)	145, 347
MluCI	AATT	3 cut(s)	179, 189, 654
MlyI	GAGTC	2 cut(s)	325, 538
MnlI	CCTC	8 cut(s)	318, 423, 493, 533, 585, 603, 657, 672
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	3 cut(s)	32, 102, 357
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	3 cut(s)	270, 336, 470
MspR9I	CCNGG	4 cut(s)	27, 271, 336, 337
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	118, 624
NciI	CCSGG	3 cut(s)	271, 336, 337
NdeII	GATC	3 cut(s)	299, 594, 669
NlaIII	CATG	3 cut(s)	52, 170, 726
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	5 cut(s)	18, 218, 561, 589, 683
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	325, 537
PpsI	GAGTC	2 cut(s)	325, 537
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	299, 594
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	347
SacII	CCGCGG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	32, 102, 357
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	3 cut(s)	299, 594, 669
SchI	GAGTC	2 cut(s)	325, 538
ScrFI	CCNGG	4 cut(s)	27, 271, 336, 337
SduI	GDGCHC	2 cut(s)	145, 347
SetI	ASST	5 cut(s)	73, 286, 347, 482, 609
SfaNI	GCATC	2 cut(s)	115, 406
Sfr303I	CCGCGG	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	179, 189, 654
SsiI	CCGC	3 cut(s)	316, 318, 618
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	347
StyD4I	CCNGG	4 cut(s)	25, 269, 334, 335
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	692
TaqI	TCGA	2 cut(s)	16, 498
TasI	AATT	3 cut(s)	179, 189, 654
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	5 cut(s)	18, 218, 561, 589, 683
Tru1I	TTAA	3 cut(s)	32, 102, 357
Tru9I	TTAA	3 cut(s)	32, 102, 357
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	464
TspMI	CCCGGG	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	707
XmaI	CCCGGG	1 cut(s)	335
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.