Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0020887

Physical Location & Seq

Genomic Coordinates Reverse (-)

594958 .. 598780

Gene Structure 3823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATTCGGTCCCTTCGAACTCACATGGGAACCTGGATGAACAGATTGCTCAGCTCATGCAGTGCAAGCCCTTGTCCGAACAAGAGGTAAGGGTGCTCTGCGAGAAGGCCAAGGAAATATTAATGGAAGAAAGCAATGTCCAGCCTGTAAAAAGCCCTGTAACTATCTGTGGGGATATTCATGGACAATTCCATGATCTAGCGGAGCTCTTCCGCATTGGAGGAAAGTGCCCAGATACAAACTATTTGTTTATGGGAGATTATGTGGACCGTGGCTATTATTCAGTTGAAACAGTGACACTCCTAGTGGCCTTGAAGGTGCGTTATCATCAGCGTATTACTATCCTAAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTTTATGGTTTTTATGACGAGTGCCTACGGAAGTATGGTAATGCCAATGTTTGGAAGATCTTTACAGATTTATTTGACTATTTTCCACTGACAGCATTGGTTGAAAGTGAAATATTCTGTCTGCATGGAGGGCTGTCTCCATCCATTGAAACCCTTGATAACATACGTAATTTTGACCGTGTACAAGAGGTTCCTCATGAGGGTCCCATGTGTGATCTTTTATGGTCTGACCCTGATCGATCGCTGTGGTTGGGGTATCTCTCCCAGGGGTGCTGGATATACGTTTGGTCAGGACATATCCGAGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

231

Amino Acids

26.46

Weight (kDa)

5.12

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT2G42500
pyrus_communis	pycom03g00740
rosa_wichuraiana	Rw5G049560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	2 cut(s)	203, 214
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	2 cut(s)	432, 581
AgsI	TTSAA	4 cut(s)	290, 316, 485, 530
AjnI	CCWGG	2 cut(s)	33, 645
AluBI	AGCT	2 cut(s)	55, 208
AluI	AGCT	2 cut(s)	55, 208
Alw21I	GWGCWC	2 cut(s)	99, 210
Alw26I	GTCTC	1 cut(s)	522
AoxI	GGCC	2 cut(s)	108, 309
AseI	ATTAAT	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	10, 268, 584
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	10, 268, 584
BaeGI	GKGCMC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	99, 210
BccI	CCATC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	35, 647
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	2 cut(s)	200, 305
BglII	AGATCT	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	35, 647
Bme18I	GGWCC	3 cut(s)	10, 268, 584
BmgT120I	GGNCC	3 cut(s)	10, 268, 584
BmiI	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
BmrFI	CCNGG	2 cut(s)	35, 647
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	619
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	111, 271, 645, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 581
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	35, 647
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	4 cut(s)	111, 271, 645, 646
BseGI	GGATG	2 cut(s)	43, 521
BseLI	CCNNNNNNNGG	2 cut(s)	432, 581
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	623
BshFI	GGCC	2 cut(s)	110, 311
BshVI	ATCGAT	1 cut(s)	619
BsiEI	CGRYCG	1 cut(s)	623
BsiHKAI	GWGCWC	2 cut(s)	99, 210
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	432, 581
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	110, 311
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	3 cut(s)	99, 210, 233
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	196, 438, 595, 616, 620
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	203, 214
BspANI	GGCC	2 cut(s)	110, 311
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
BspQI	GCTCTTC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	562
BssECI	CCNNGG	4 cut(s)	111, 271, 645, 646
BssMI	GATC	5 cut(s)	196, 438, 595, 616, 620
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	35, 647
Bst4CI	ACNGT	3 cut(s)	272, 295, 560
Bst6I	CTCTTC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	51, 347
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	43, 521
BstKTI	GATC	5 cut(s)	199, 441, 598, 619, 623
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	5 cut(s)	196, 438, 595, 616, 620
BstMCI	CGRYCG	1 cut(s)	623
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 511
BstNI	CCWGG	2 cut(s)	35, 647
BstSCI	CCNGG	2 cut(s)	33, 645
BstSLI	GKGCMC	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	110, 311
BsuTUI	ATCGAT	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	43, 521
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	3 cut(s)	68, 300, 467
Cac8I	GCNNGC	1 cut(s)	68
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	10, 268, 584
ClaI	ATCGAT	1 cut(s)	619
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	8 cut(s)	26, 58, 182, 194, 359, 506, 578, 589
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	2 cut(s)	51, 347
DpnI	GATC	5 cut(s)	198, 440, 597, 618, 622
DpnII	GATC	5 cut(s)	196, 438, 595, 616, 620
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	208
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	3 cut(s)	10, 268, 584
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	33, 645
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	8 cut(s)	29, 61, 185, 197, 362, 509, 581, 592
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	8 cut(s)	25, 57, 181, 193, 358, 505, 577, 588
FokI	GGATG	2 cut(s)	50, 508
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	200, 305
HaeIII	GGCC	2 cut(s)	110, 311
Hin1II	CATG	8 cut(s)	29, 61, 185, 197, 362, 509, 581, 592
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	2 cut(s)	268, 563
Hpy188I	TCNGA	4 cut(s)	79, 372, 610, 683
Hpy188III	TCNNGA	2 cut(s)	578, 672
Hpy8I	GTNNAC	2 cut(s)	268, 563
HpyAV	CCTTC	3 cut(s)	24, 100, 310
HpyCH4III	ACNGT	3 cut(s)	272, 295, 560
HpyCH4IV	ACGT	2 cut(s)	547, 663
HpyCH4V	TGCA	3 cut(s)	61, 66, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 511
HpyF3I	CTNAG	2 cut(s)	51, 347
HpySE526I	ACGT	2 cut(s)	547, 663
Hsp92II	CATG	8 cut(s)	29, 61, 185, 197, 362, 509, 581, 592
KflI	GGGWCCC	1 cut(s)	584
Kzo9I	GATC	5 cut(s)	196, 438, 595, 616, 620
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	200, 305
MaeII	ACGT	2 cut(s)	547, 663
MaeIII	GTNAC	2 cut(s)	160, 295
MalI	GATC	5 cut(s)	198, 440, 597, 618, 622
MboI	GATC	5 cut(s)	196, 438, 595, 616, 620
MboII	GAAGA	3 cut(s)	140, 202, 448
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	3 cut(s)	99, 210, 233
MluCI	AATT	2 cut(s)	188, 550
MnlI	CCTC	7 cut(s)	79, 215, 344, 503, 562, 574, 585
MseI	TTAA	2 cut(s)	122, 691
MspR9I	CCNGG	2 cut(s)	35, 647
MvaI	CCWGG	2 cut(s)	35, 647
MwoI	GCNNNNNNNGC	2 cut(s)	67, 511
NdeII	GATC	5 cut(s)	196, 438, 595, 616, 620
NlaIII	CATG	8 cut(s)	29, 61, 185, 197, 362, 509, 581, 592
NlaIV	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
NmuCI	GTSAC	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	1 cut(s)	577
PasI	CCCWGGG	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	432
Ple19I	CGATCG	1 cut(s)	623
Ppu21I	YACGTR	1 cut(s)	548
PpuMI	RGGWCCY	1 cut(s)	584
PshBI	ATTAAT	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	33, 645
PspGI	CCWGG	2 cut(s)	33, 645
PspN4I	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
PspPI	GGNCC	3 cut(s)	10, 268, 584
PspPPI	RGGWCCY	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	555, 587
PsuI	RGATCY	1 cut(s)	438
PvuI	CGATCG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	122, 691
Sau3AI	GATC	5 cut(s)	196, 438, 595, 616, 620
Sau96I	GGNCC	3 cut(s)	10, 268, 584
ScrFI	CCNGG	2 cut(s)	35, 647
SduI	GDGCHC	3 cut(s)	99, 210, 233
SetI	ASST	8 cut(s)	36, 57, 90, 210, 321, 550, 573, 666
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	3 cut(s)	10, 268, 584
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	548
Sse9I	AATT	2 cut(s)	188, 550
SsiI	CCGC	2 cut(s)	203, 214
SspI	AATATT	2 cut(s)	120, 495
SspMI	CTAG	2 cut(s)	200, 305
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	33, 645
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	272, 295, 560
TaiI	ACGT	2 cut(s)	550, 666
TaqI	TCGA	2 cut(s)	17, 619
TasI	AATT	2 cut(s)	188, 550
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	122, 691
Tru9I	TTAA	2 cut(s)	122, 691
TscAI	CASTG	3 cut(s)	68, 300, 474
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	54, 170, 375
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	3 cut(s)	68, 300, 474
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	3 cut(s)	10, 268, 584
VspI	ATTAAT	1 cut(s)	122
XspI	CTAG	2 cut(s)	200, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.