Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

17697626 .. 17701417

Gene Structure 3792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGATCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTACGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTACGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCCCCATGAAGGGCCGATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGGGGTGCCGGATATACATTTGGTCAGGATATATCTGAACAATTCAATCACACAAACAACTTAAAGCTGATCGCCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTACCGTTGTGGGAACATGGCCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATCCAGTTTGAACCAGCACCGAGGAGAGGAGAACCAGACGTCACCCGAAGGACTCCAGACTATTTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048863 GO:0048869 GO:0070013 GO:0071704 GO:0071944 GO:0080022 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

313

Amino Acids

35.83

Weight (kDa)

4.98

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	55 - 172	4.6e-25	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	656
AccI	GTMKAC	2 cut(s)	412, 846
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	10, 556
AcyI	GRCGYC	1 cut(s)	909
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	5 cut(s)	226, 259, 587, 588, 896
AgsI	TTSAA	4 cut(s)	296, 572, 697, 881
AluBI	AGCT	4 cut(s)	61, 214, 718, 731
AluI	AGCT	4 cut(s)	61, 214, 718, 731
Alw21I	GWGCWC	2 cut(s)	733, 799
Alw26I	GTCTC	2 cut(s)	258, 530
Alw44I	GTGCAC	1 cut(s)	795
Ama87I	CYCGRG	2 cut(s)	651, 726
AoxI	GGCC	2 cut(s)	590, 828
ApaLI	GTGCAC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	10, 556
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	274, 590
AsuHPI	GGTGA	3 cut(s)	191, 725, 904
AvaI	CYCGRG	2 cut(s)	651, 726
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	3 cut(s)	239, 582, 799
BanI	GGYRCC	1 cut(s)	656
BanII	GRGCYC	2 cut(s)	733, 766
BauI	CACGAG	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	733, 799
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	535, 743
BceAI	ACGGC	1 cut(s)	439
BciVI	GTATCC	1 cut(s)	746
BcoDI	GTCTC	2 cut(s)	258, 530
BfmI	CTRYAG	1 cut(s)	853
BfuI	GTATCC	1 cut(s)	746
BglII	AGATCT	2 cut(s)	51, 123
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	2 cut(s)	651, 726
BmgT120I	GGNCC	2 cut(s)	274, 590
BmiI	GGNNCC	2 cut(s)	658, 860
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	2 cut(s)	315, 651
BmuI	ACTGGG	1 cut(s)	769
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	909
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	860
BsaHI	GRCGYC	1 cut(s)	909
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	5 cut(s)	117, 277, 483, 650, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 259, 587, 588, 896
Bse1I	ACTGG	3 cut(s)	736, 764, 874
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	5 cut(s)	117, 277, 483, 650, 890
BseGI	GGATG	3 cut(s)	139, 754, 870
BseLI	CCNNNNNNNGG	5 cut(s)	226, 259, 587, 588, 896
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	350, 398
BseNI	ACTGG	3 cut(s)	736, 764, 874
BseRI	GAGGAG	3 cut(s)	639, 907, 912
BseSI	GKGCMC	3 cut(s)	239, 582, 799
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	592, 830
BshNI	GGYRCC	1 cut(s)	656
BsiHKAI	GWGCWC	2 cut(s)	733, 799
BsiHKCI	CYCGRG	2 cut(s)	651, 726
BsiSI	CCGG	1 cut(s)	660
BslI	CCNNNNNNNGG	5 cut(s)	226, 259, 587, 588, 896
BsmAI	GTCTC	2 cut(s)	258, 530
BsnI	GGCC	2 cut(s)	592, 830
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	2 cut(s)	651, 726
Bsp1286I	GDGCHC	5 cut(s)	239, 582, 733, 766, 799
Bsp143I	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	592, 830
BspCNI	CTCAG	2 cut(s)	349, 397
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	658, 860
BspMAI	CTGCAG	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	736, 764, 874
BssECI	CCNNGG	5 cut(s)	117, 277, 483, 650, 890
BssMI	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
BssNI	GRCGYC	1 cut(s)	909
BssSI	CACGAG	1 cut(s)	767
BssT1I	CCWWGG	2 cut(s)	117, 483
Bst2BI	CACGAG	1 cut(s)	767
Bst4CI	ACNGT	4 cut(s)	195, 278, 301, 815
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	909
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	336, 353, 384
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	139, 754, 870
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	6 cut(s)	40, 54, 126, 205, 565, 723
BstMAI	GTCTC	2 cut(s)	258, 530
BstMBI	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
BstSFI	CTRYAG	1 cut(s)	853
BstSLI	GKGCMC	3 cut(s)	239, 582, 799
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	51, 123
BstYI	RGATCY	2 cut(s)	51, 123
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	592, 830
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	139, 754, 870
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	74, 799
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	274, 590
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	7 cut(s)	64, 188, 200, 365, 512, 584, 826
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	336, 353, 384
DpnI	GATC	6 cut(s)	39, 53, 125, 204, 564, 722
DpnII	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	731
Eco130I	CCWWGG	2 cut(s)	117, 483
Eco24I	GRGCYC	2 cut(s)	733, 766
Eco31I	GGTCTC	1 cut(s)	530
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	731
Eco88I	CYCGRG	2 cut(s)	651, 726
EcoICRI	GAGCTC	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	117, 483
EcoT38I	GRGCYC	2 cut(s)	733, 766
ErhI	CCWWGG	2 cut(s)	117, 483
FaeI	CATG	7 cut(s)	67, 191, 203, 368, 515, 587, 829
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	7 cut(s)	63, 187, 199, 364, 511, 583, 825
FblI	GTMKAC	2 cut(s)	412, 846
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	3 cut(s)	146, 761, 857
FriOI	GRGCYC	2 cut(s)	733, 766
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	592, 830
HapII	CCGG	1 cut(s)	660
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	909
Hin1II	CATG	7 cut(s)	67, 191, 203, 368, 515, 587, 829
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HinfI	GANTC	4 cut(s)	342, 491, 835, 922
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	3 cut(s)	191, 725, 904
Hpy166II	GTNNAC	4 cut(s)	274, 413, 797, 847
Hpy188I	TCNGA	7 cut(s)	21, 85, 378, 477, 496, 616, 688
Hpy188III	TCNNGA	7 cut(s)	41, 535, 572, 677, 767, 839, 926
Hpy8I	GTNNAC	4 cut(s)	274, 413, 797, 847
Hpy99I	CGWCG	2 cut(s)	25, 851
HpyAV	CCTTC	4 cut(s)	518, 581, 877, 912
HpyCH4III	ACNGT	4 cut(s)	195, 278, 301, 815
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	5 cut(s)	67, 72, 209, 797, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
HpyF3I	CTNAG	3 cut(s)	336, 353, 384
HpySE526I	ACGT	1 cut(s)	909
Hsp92I	GRCGYC	1 cut(s)	909
Hsp92II	CATG	7 cut(s)	67, 191, 203, 368, 515, 587, 829
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	315, 651
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	6 cut(s)	166, 301, 599, 781, 809, 910
MalI	GATC	6 cut(s)	39, 53, 125, 204, 564, 722
MboI	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
MboII	GAAGA	1 cut(s)	451
MflI	RGATCY	2 cut(s)	51, 123
MhlI	GDGCHC	5 cut(s)	239, 582, 733, 766, 799
MluCI	AATT	4 cut(s)	10, 247, 556, 692
MlyI	GAGTC	2 cut(s)	500, 916
MmeI	TCCRAC	1 cut(s)	44
MseI	TTAA	3 cut(s)	128, 320, 713
MspI	CCGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
NdeII	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
NlaIII	CATG	7 cut(s)	67, 191, 203, 368, 515, 587, 829
NlaIV	GGNNCC	2 cut(s)	658, 860
NmuCI	GTSAC	3 cut(s)	166, 599, 910
PfeI	GAWTC	2 cut(s)	342, 835
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	2 cut(s)	499, 916
PpsI	GAGTC	2 cut(s)	499, 916
Psp124BI	GAGCTC	1 cut(s)	733
PspN4I	GGNNCC	2 cut(s)	658, 860
PspPI	GGNCC	2 cut(s)	274, 590
PstI	CTGCAG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	51, 123
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	733
SalI	GTCGAC	1 cut(s)	845
SaqAI	TTAA	3 cut(s)	128, 320, 713
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	6 cut(s)	37, 51, 123, 202, 562, 720
Sau96I	GGNCC	2 cut(s)	274, 590
SchI	GAGTC	2 cut(s)	500, 916
SduI	GDGCHC	5 cut(s)	239, 582, 733, 766, 799
SfaNI	GCATC	2 cut(s)	315, 651
SfcI	CTRYAG	1 cut(s)	853
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	4 cut(s)	10, 247, 556, 692
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	117, 483
TaaI	ACNGT	4 cut(s)	195, 278, 301, 815
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	5 cut(s)	462, 534, 565, 833, 846
TaqII	GACCGA	1 cut(s)	642
TasI	AATT	4 cut(s)	10, 247, 556, 692
TfiI	GAWTC	2 cut(s)	342, 835
Tru1I	TTAA	3 cut(s)	128, 320, 713
Tru9I	TTAA	3 cut(s)	128, 320, 713
TscAI	CASTG	2 cut(s)	74, 799
TseFI	GTSAC	3 cut(s)	166, 599, 910
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	3 cut(s)	166, 599, 910
TspDTI	ATGAA	7 cut(s)	150, 176, 381, 420, 500, 600, 859
TspGWI	ACGGA	2 cut(s)	38, 209
TspRI	CASTG	2 cut(s)	74, 799
VneI	GTGCAC	1 cut(s)	795
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	10, 556
XmiI	GTMKAC	2 cut(s)	412, 846
ZraI	GACGTC	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.