Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001381.1

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

48399 .. 52723

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001381.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggattcggtcccgtcgaactcgcttgggaacctcgacgagcagattgctcagctcatgcagtgcaagcctttgtccgaacaagaggtaagggggctctgtgaaaaggctaaggagatattgatggaagaaagcaacgttcagcctgtgaaaagcccagtaactatttgcggtgatattcatggacaatttcatgatcttgccgagcttttccgtattggaggaaagtgtccagataccaattatttgtttatgggagattatgtggatcgtggctattattccgttgaaaccgtaactcttttggtggccttgaaggttcgttactctcaacgtataactatcctaagagggaatcatgaaagtcgtcagattactcaagtttatggtttttatgacgagtgcttacggaagtatggtaatgccaatgtttggaagacctttactgatttatttgactattttcccctgacagctttggttgaatctgaaatcttctgcttgcacggtggactttctccctcaattgaaacccttgataacatacgtaattttgaccgtgttcaagaggttcctcatgaaggtcccatgtgtgatcttctttggtctgacccggatgatcgctgtggctggggtatctctcccagaggtgctggatatacttttggccaggacatatccgagcagttcaatcataccaataacttgaagttgattgctagagcacaccagctggtcatggaaggttataactggggtcatgaacaaaaagttgtcaccatattcagtgcacccaactactgttaccgctgtggaaatatggcatcaatcctagaagtcgatgactgcaaaggtcacacattcattcagtttgagccagctccaaggaggggagagccagatgttacccgaagaacacctgattatttcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

311

Amino Acids

35.49

Weight (kDa)

5.08

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	2 cut(s)	171, 808
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	667
AfiI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
AgsI	TTSAA	7 cut(s)	290, 316, 485, 530, 566, 691, 709
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	5 cut(s)	55, 208, 476, 733, 881
AluI	AGCT	5 cut(s)	55, 208, 476, 733, 881
Alw21I	GWGCWC	2 cut(s)	727, 793
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	2 cut(s)	309, 667
ApaLI	GTGCAC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	10, 584
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	185, 769
AvaII	GGWCC	2 cut(s)	10, 584
BaeGI	GKGCMC	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	727, 793
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	1 cut(s)	614
BfaI	CTAG	2 cut(s)	720, 833
BlpI	GCTNAGC	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	614, 671
Bme18I	GGWCC	2 cut(s)	10, 584
BmgT120I	GGNCC	2 cut(s)	10, 584
BmiI	GGNNCC	4 cut(s)	12, 32, 573, 586
BmrFI	CCNGG	2 cut(s)	614, 671
BmrI	ACTGGG	2 cut(s)	152, 763
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	2 cut(s)	152, 763
BpiI	GAAGAC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	884
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 581, 890
Bse1I	ACTGG	2 cut(s)	158, 758
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	884
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	2 cut(s)	158, 758
BseSI	GKGCMC	1 cut(s)	793
BseYI	CCCAGC	1 cut(s)	630
BshFI	GGCC	2 cut(s)	311, 669
BsiHKAI	GWGCWC	2 cut(s)	727, 793
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	311, 669
Bsp1286I	GDGCHC	3 cut(s)	99, 727, 793
Bsp143I	GATC	4 cut(s)	196, 268, 595, 619
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	171, 808
BspANI	GGCC	2 cut(s)	311, 669
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	4 cut(s)	193, 358, 577, 760
BspLI	GGNNCC	4 cut(s)	12, 32, 573, 586
BspPI	GGATC	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	158, 758
BssECI	CCNNGG	1 cut(s)	884
BssMI	GATC	4 cut(s)	196, 268, 595, 619
BssT1I	CCWWGG	1 cut(s)	884
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	4 cut(s)	295, 509, 560, 803
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	68, 503, 879
BstDEI	CTNAG	3 cut(s)	51, 111, 347
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	4 cut(s)	199, 271, 598, 622
BstMBI	GATC	4 cut(s)	196, 268, 595, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	612, 669
BstSLI	GKGCMC	1 cut(s)	793
BstSNI	TACGTA	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	311, 669
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 793
Cac8I	GCNNGC	3 cut(s)	68, 503, 879
CciI	TCATGA	4 cut(s)	193, 358, 577, 760
Cfr13I	GGNCC	2 cut(s)	10, 584
CviAII	CATG	8 cut(s)	58, 182, 194, 359, 578, 589, 739, 761
DdeI	CTNAG	3 cut(s)	51, 111, 347
DpnI	GATC	4 cut(s)	198, 270, 597, 621
DpnII	GATC	4 cut(s)	196, 268, 595, 619
EaeI	YGGCCR	1 cut(s)	667
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	884
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	10, 584
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	884
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	8 cut(s)	57, 181, 193, 358, 577, 588, 738, 760
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	720, 833
GsaI	CCCAGC	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	311, 669
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
HinfI	GANTC	3 cut(s)	5, 355, 485
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	2 cut(s)	185, 769
Hpy166II	GTNNAC	2 cut(s)	512, 791
Hpy188I	TCNGA	5 cut(s)	79, 372, 490, 610, 682
Hpy188III	TCNNGA	6 cut(s)	194, 233, 359, 566, 578, 761
Hpy8I	GTNNAC	2 cut(s)	512, 791
Hpy99I	CGWCG	2 cut(s)	19, 41
HpyAV	CCTTC	3 cut(s)	310, 575, 737
HpyCH4III	ACNGT	4 cut(s)	295, 509, 560, 803
HpyCH4IV	ACGT	3 cut(s)	138, 334, 547
HpyCH4V	TGCA	5 cut(s)	61, 66, 505, 791, 849
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	3 cut(s)	51, 111, 347
HpySE526I	ACGT	3 cut(s)	138, 334, 547
Hsp92II	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
Kzo9I	GATC	4 cut(s)	196, 268, 595, 619
LmnI	GCTCC	1 cut(s)	886
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	2 cut(s)	720, 833
MaeII	ACGT	3 cut(s)	138, 334, 547
MaeIII	GTNAC	7 cut(s)	160, 295, 323, 775, 803, 854, 904
MalI	GATC	4 cut(s)	198, 270, 597, 621
MboI	GATC	4 cut(s)	196, 268, 595, 619
MboII	GAAGA	5 cut(s)	140, 448, 487, 590, 924
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	3 cut(s)	99, 727, 793
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	4 cut(s)	188, 241, 525, 550
MluNI	TGGCCA	1 cut(s)	669
MnlI	CCTC	9 cut(s)	44, 79, 215, 344, 532, 562, 585, 641, 882
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	733, 810
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	2 cut(s)	614, 671
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	196, 268, 595, 619
NlaIII	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
NlaIV	GGNNCC	4 cut(s)	12, 32, 573, 586
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	775, 854
PagI	TCATGA	4 cut(s)	193, 358, 577, 760
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	5, 355, 485
PflMI	CCANNNNNTGG	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	548
PpuMI	RGGWCCY	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	4 cut(s)	12, 32, 573, 586
PspPI	GGNCC	2 cut(s)	10, 584
PspPPI	RGGWCCY	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	733
Sau3AI	GATC	4 cut(s)	196, 268, 595, 619
Sau96I	GGNCC	2 cut(s)	10, 584
ScrFI	CCNGG	2 cut(s)	614, 671
SduI	GDGCHC	3 cut(s)	99, 727, 793
SfaNI	GCATC	1 cut(s)	833
SinI	GGWCC	2 cut(s)	10, 584
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	548
Sse9I	AATT	4 cut(s)	188, 241, 525, 550
SsiI	CCGC	2 cut(s)	171, 808
SspMI	CTAG	2 cut(s)	720, 833
StyD4I	CCNGG	2 cut(s)	612, 669
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	4 cut(s)	295, 509, 560, 803
TaiI	ACGT	3 cut(s)	141, 337, 550
TaqI	TCGA	3 cut(s)	17, 36, 840
TasI	AATT	4 cut(s)	188, 241, 525, 550
TfiI	GAWTC	3 cut(s)	5, 355, 485
TscAI	CASTG	2 cut(s)	68, 793
TseFI	GTSAC	2 cut(s)	775, 854
Tsp45I	GTSAC	2 cut(s)	775, 854
TspDTI	ATGAA	6 cut(s)	170, 182, 375, 594, 777, 853
TspGWI	ACGGA	3 cut(s)	203, 274, 424
TspRI	CASTG	2 cut(s)	68, 793
Van91I	CCANNNNNTGG	1 cut(s)	432
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	2 cut(s)	10, 584
XagI	CCTNNNNNAGG	1 cut(s)	579
XspI	CTAG	2 cut(s)	720, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.