Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

3676993 .. 3681754

Gene Structure 4762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGCGTGAATTCGGTATCGTCGGACACGAACAGCGATCTCAACGAGCAGATCGAGCAACTCATGCAGTGCAAGCCACTCTCGGAGCAACAGGTGAGAATGTTATGCGAGAAAGCAAAGGAAATTCTAATGGGAGAAAGCAATGTTCAGCCTGTGAAAAGCCCAGTGACAATTTGTGGAGATATTCATGGGCAGTTTCACGACCTTGCAGAGCTTTTCCGAATTGGAGGGAAGTGTCCTGATACCAATTACTTGTTTATGGGAGATTATGTGGACCGTGGCTATTATTCTGTTGAAACCGTGACGCTCTTAGTGGCTCTGAAAGTGCATTATCCTCAGCGAATCACTATTCTCAGAGGAAACCATGAAAGTCGCCAGATTACTCAGGTTTATGGGTTTTATGATGAATGTCTCCGAAAGTATGGCAATGCCAATGTTTGGAAGATCTTCACTGACCTTTTTGACTACTTTCCACTGACAGCATTGGTCGAGTCAGAAATATTTTGCCTGCATGGTGGATTGTCCCCTTCAATTGAAAACCTTGATAACATAAGGAATTTTGATCGATCTGTTCAAGAGGTTCCACATGAAGGGCCGATGTGTGATCTGTTATGGTCCGACCCAGATGACCGATGTGGTTGGGGTATTTCGCCTCGTGGTGCAGGATATACTTTTGGCCAGGATATATCTGAACAGTTTAATCATACAAACAGTTTAAAGTTGATTGCAAGAGCTCATCAGTTGGTCATGGATGGATTCAACTGGGCACATGAACAAAAGGTGGTTACTATATTTAGTGCACCTAATTATTGCTATCGCTGCGGGAACATGGCTTCTGTTTTAGAAGTCGATGACTGCAGGGGCCATACCTTCATTCAGTTTGAGCCAGCTCCGAGGAGAGGAGAGCCAGATGTTACCCGTAGAACACCCGATTACTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048863 GO:0048869 GO:0071704 GO:0071944 GO:0080022 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

315

Amino Acids

35.81

Weight (kDa)

5.12

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AciI	CCGC	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	3 cut(s)	10, 123, 556
AfiI	CCNNNNNNNGG	3 cut(s)	438, 590, 899
AgsI	TTSAA	5 cut(s)	296, 531, 536, 575, 760
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	3 cut(s)	214, 734, 890
AluI	AGCT	3 cut(s)	214, 734, 890
Alw21I	GWGCWC	2 cut(s)	736, 802
Alw26I	GTCTC	1 cut(s)	416
Alw44I	GTGCAC	1 cut(s)	798
AoxI	GGCC	3 cut(s)	593, 676, 862
ApaLI	GTGCAC	1 cut(s)	798
ApeKI	GCWGC	1 cut(s)	819
ApoI	RAATTY	3 cut(s)	10, 123, 556
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	4 cut(s)	274, 593, 615, 862
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	274, 615
BaeGI	GKGCMC	2 cut(s)	769, 802
BalI	TGGCCA	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	736
BauI	CACGAG	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	736, 802
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	806
BccI	CCATC	1 cut(s)	746
BciT130I	CCWGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	856
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	1 cut(s)	820
BlsI	GCNGC	1 cut(s)	821
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	2 cut(s)	274, 615
BmgT120I	GGNCC	4 cut(s)	274, 593, 615, 862
BmiI	GGNNCC	2 cut(s)	582, 863
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	2 cut(s)	158, 772
BmuI	ACTGGG	2 cut(s)	158, 772
Bpu10I	CCTNAGC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	277, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 590, 899
Bse1I	ACTGG	2 cut(s)	164, 767
Bse3DI	GCAATG	2 cut(s)	148, 433
BseBI	CCWGG	1 cut(s)	680
BseCI	ATCGAT	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	277, 893
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	3 cut(s)	438, 590, 899
BseMI	GCAATG	2 cut(s)	148, 433
BseMII	CTCAG	3 cut(s)	350, 367, 398
BseNI	ACTGG	2 cut(s)	164, 767
BseRI	GAGGAG	2 cut(s)	910, 915
BseSI	GKGCMC	2 cut(s)	769, 802
BseXI	GCAGC	1 cut(s)	806
BsgI	GTGCAG	1 cut(s)	681
BshFI	GGCC	3 cut(s)	595, 678, 864
BshVI	ATCGAT	1 cut(s)	565
BsiHKAI	GWGCWC	2 cut(s)	736, 802
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	438, 590, 899
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	595, 678, 864
Bsp1286I	GDGCHC	3 cut(s)	736, 769, 802
Bsp143I	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
BspACI	CCGC	1 cut(s)	822
BspANI	GGCC	3 cut(s)	595, 678, 864
BspCNI	CTCAG	3 cut(s)	349, 366, 397
BspDI	ATCGAT	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	582, 863
BspMAI	CTGCAG	1 cut(s)	860
BsrDI	GCAATG	2 cut(s)	148, 433
BsrI	ACTGG	2 cut(s)	164, 767
BssECI	CCNNGG	2 cut(s)	277, 893
BssMI	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
BssSI	CACGAG	1 cut(s)	654
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	4 cut(s)	278, 301, 696, 713
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	74, 509, 888
BstDEI	CTNAG	4 cut(s)	310, 336, 353, 384
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	6 cut(s)	40, 54, 447, 565, 569, 607
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 64, 73, 819
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	856
BstSLI	GKGCMC	2 cut(s)	769, 802
BstV1I	GCAGC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
Bsu15I	ATCGAT	1 cut(s)	565
BsuRI	GGCC	3 cut(s)	595, 678, 864
BsuTUI	ATCGAT	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	4 cut(s)	74, 171, 450, 473
Cac8I	GCNNGC	3 cut(s)	74, 509, 888
Cfr13I	GGNCC	4 cut(s)	274, 593, 615, 862
ClaI	ATCGAT	1 cut(s)	565
CseI	GACGC	1 cut(s)	313
CviAII	CATG	8 cut(s)	64, 188, 365, 512, 587, 748, 770, 829
DdeI	CTNAG	4 cut(s)	310, 336, 353, 384
DpnI	GATC	6 cut(s)	39, 53, 446, 564, 568, 606
DpnII	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
DraI	TTTAAA	1 cut(s)	717
EaeI	YGGCCR	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	274, 615
Eco53kI	GAGCTC	1 cut(s)	734
EcoICRI	GAGCTC	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	736
FaeI	CATG	8 cut(s)	67, 191, 368, 515, 590, 751, 773, 832
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	8 cut(s)	63, 187, 364, 511, 586, 747, 769, 828
FauI	CCCGC	1 cut(s)	815
Fnu4HI	GCNGC	1 cut(s)	820
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	1 cut(s)	820
GluI	GCNGC	1 cut(s)	820
HaeIII	GGCC	3 cut(s)	595, 678, 864
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	8 cut(s)	67, 191, 368, 515, 590, 751, 773, 832
HinfI	GANTC	3 cut(s)	342, 491, 756
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	274, 800
Hpy188III	TCNNGA	3 cut(s)	200, 239, 575
Hpy8I	GTNNAC	2 cut(s)	274, 800
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	537, 584, 880
HpyCH4III	ACNGT	4 cut(s)	278, 301, 696, 713
HpyCH4V	TGCA	9 cut(s)	67, 72, 209, 328, 511, 662, 728, 800, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 64, 73, 819
HpyF3I	CTNAG	4 cut(s)	310, 336, 353, 384
Hsp92II	CATG	8 cut(s)	67, 191, 368, 515, 590, 751, 773, 832
Kzo9I	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
LmnI	GCTCC	2 cut(s)	85, 895
Lsp1109I	GCAGC	1 cut(s)	806
MaeIII	GTNAC	4 cut(s)	166, 301, 784, 913
MalI	GATC	6 cut(s)	39, 53, 446, 564, 568, 606
MboI	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
MboII	GAAGA	2 cut(s)	439, 454
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	3 cut(s)	736, 769, 802
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	8 cut(s)	10, 123, 171, 222, 247, 531, 556, 805
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	7 cut(s)	221, 345, 350, 571, 663, 888, 893
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	699, 716
Msp20I	TGGCCA	1 cut(s)	678
MspR9I	CCNGG	1 cut(s)	680
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	4 cut(s)	55, 64, 73, 819
NdeII	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
NlaIII	CATG	8 cut(s)	67, 191, 368, 515, 590, 751, 773, 832
NlaIV	GGNNCC	2 cut(s)	582, 863
NmuCI	GTSAC	2 cut(s)	166, 301
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 51
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	342, 756
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	821
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	582, 863
PspPI	GGNCC	4 cut(s)	274, 593, 615, 862
PstI	CTGCAG	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	736
SaqAI	TTAA	2 cut(s)	699, 716
SatI	GCNGC	1 cut(s)	820
Sau3AI	GATC	6 cut(s)	37, 51, 444, 562, 566, 604
Sau96I	GGNCC	4 cut(s)	274, 593, 615, 862
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	3 cut(s)	736, 769, 802
SfcI	CTRYAG	1 cut(s)	856
SinI	GGWCC	2 cut(s)	274, 615
Sse9I	AATT	8 cut(s)	10, 123, 171, 222, 247, 531, 556, 805
SsiI	CCGC	1 cut(s)	822
SspI	AATATT	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	736
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	4 cut(s)	278, 301, 696, 713
TaqI	TCGA	4 cut(s)	54, 489, 565, 849
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	8 cut(s)	10, 123, 171, 222, 247, 531, 556, 805
TfiI	GAWTC	2 cut(s)	342, 756
Tru1I	TTAA	2 cut(s)	699, 716
Tru9I	TTAA	2 cut(s)	699, 716
TscAI	CASTG	4 cut(s)	74, 171, 457, 480
TseFI	GTSAC	2 cut(s)	166, 301
TseI	GCWGC	1 cut(s)	819
Tsp45I	GTSAC	2 cut(s)	166, 301
TspDTI	ATGAA	6 cut(s)	176, 381, 420, 603, 786, 862
TspRI	CASTG	4 cut(s)	74, 171, 457, 480
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	798
VpaK11BI	GGWCC	2 cut(s)	274, 615
XapI	RAATTY	3 cut(s)	10, 123, 556
XmnI	GAANNNNTTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.