Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

574437 .. 580815

Gene Structure 6379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATGCGGTCCCTTCGAACTCACATGGGAACCTGGATGAGCAGATTGCTCAGCTCATGCAGTGCAAGCCCTTGTCCGAACCAGAGGTAAGGGGGCTCTGTGAGAAGGCCAAGGAGATATTAATGGAAGAAAGCAATGTCCAGCCTGTGAAAAGCCCTGTGACTATTTGTGGTGATATTCATGGACAATTCCATGATCTTGCCGAGCTTTTCCGCATTGGAGGAAAGTGTCCGGATACGAATTATTTGTTTATGGGAGATTATGTGGATCGTGGCTATTATTCAGTTGAAACAGTGACACTCTTGGTTGCCTTGAAGGTGCGTTATCCTCAACGTATTACTATCCTAAGAGGAAATCATGAAAGCCGTCAGATTACTCAAGTTTATGGTTTTTATGATGAGTGCCTACGGAAGTATGGTAATGCCAATGTTTGGAAGATCTTTACAGATTTATTTGACTATTTCCCTCTGACAGCATTGGTTGAATCTGAAATTTTCTGCCTGCATGGTGGACTGTCTCCATCCATTGAAACCCTTGATAATATACGTAATTTTGACCGTGTACAAGAGGTTCCTCACGAGGGCCCCATGTGCGATCTTCTATGGTCTGATCCTGATGATCGCTGTGGTTGGGGTATCTCTCCCAGGGGTGCTGGATATACTTTTGGCCAGGACATATCTGAGCAGTTCAATCATACAAATAACTTAAAGTTGATTGCTAGAGCACATCAGCTGGTCATGGAAGGATATAACTGGGGTCATGAACAAAAAGTCGTCACTATATTTAGTGCACCCAACTATTGTTATCGCTGTGGAAATATGGCATCCATCCTTGAAGTCGATGACTGCAAAGGTCACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCAGATGTGACCCGAAGAACACCTGATTACTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

312

Amino Acids

35.49

Weight (kDa)

5.14

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	2 cut(s)	8, 214
AclWI	GGATC	2 cut(s)	276, 605
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	492
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
AgsI	TTSAA	6 cut(s)	290, 316, 485, 530, 691, 836
AjnI	CCWGG	3 cut(s)	33, 644, 669
AluBI	AGCT	4 cut(s)	55, 208, 733, 881
AluI	AGCT	4 cut(s)	55, 208, 733, 881
Alw21I	GWGCWC	2 cut(s)	727, 793
Alw26I	GTCTC	1 cut(s)	522
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	2 cut(s)	276, 605
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	3 cut(s)	108, 583, 667
ApaI	GGGCCC	1 cut(s)	587
ApaLI	GTGCAC	1 cut(s)	789
ApoI	RAATTY	1 cut(s)	492
AseI	ATTAAT	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	10, 583, 584
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	587, 793
BalI	TGGCCA	1 cut(s)	669
BanII	GRGCYC	2 cut(s)	99, 587
BauI	CACGAG	1 cut(s)	578
Bbv12I	GWGCWC	2 cut(s)	727, 793
BccI	CCATC	2 cut(s)	529, 836
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	3 cut(s)	35, 646, 671
BciVI	GTATCC	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	51
Bme1390I	CCNGG	3 cut(s)	35, 646, 671
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	3 cut(s)	10, 583, 584
BmiI	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
BmrFI	CCNGG	3 cut(s)	35, 646, 671
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	763
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	111, 644, 645, 884
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 581, 890
Bse1I	ACTGG	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	35, 646, 671
BseDI	CCNNGG	4 cut(s)	111, 644, 645, 884
BseGI	GGATG	5 cut(s)	10, 43, 521, 824, 828
BseLI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	65, 672
BseNI	ACTGG	1 cut(s)	758
BseSI	GKGCMC	2 cut(s)	587, 793
BshFI	GGCC	3 cut(s)	110, 585, 669
BsiHKAI	GWGCWC	2 cut(s)	727, 793
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
BsmAI	GTCTC	1 cut(s)	522
BsnI	GGCC	3 cut(s)	110, 585, 669
Bsp119I	TTCGAA	1 cut(s)	17
Bsp120I	GGGCCC	1 cut(s)	583
Bsp1286I	GDGCHC	4 cut(s)	99, 587, 727, 793
Bsp13I	TCCGGA	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	8, 214
BspANI	GGCC	3 cut(s)	110, 585, 669
BspCNI	CTCAG	2 cut(s)	64, 673
BspEI	TCCGGA	1 cut(s)	232
BspHI	TCATGA	2 cut(s)	358, 760
BspLI	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
BspPI	GGATC	2 cut(s)	276, 605
BspT104I	TTCGAA	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	758
BssECI	CCNNGG	4 cut(s)	111, 644, 645, 884
BssMI	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	111, 884
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	3 cut(s)	35, 646, 671
Bst4CI	ACNGT	3 cut(s)	295, 516, 560
BstAUI	TGTACA	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	68, 503, 879
BstDEI	CTNAG	3 cut(s)	51, 347, 681
BstF5I	GGATG	5 cut(s)	10, 43, 521, 824, 828
BstKTI	GATC	6 cut(s)	199, 271, 441, 598, 613, 622
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 591
BstNI	CCWGG	3 cut(s)	35, 646, 671
BstSCI	CCNGG	3 cut(s)	33, 644, 669
BstSLI	GKGCMC	2 cut(s)	587, 793
BstSNI	TACGTA	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	110, 585, 669
BtsCI	GGATG	5 cut(s)	10, 43, 521, 824, 828
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 300
Cac8I	GCNNGC	3 cut(s)	68, 503, 879
CciI	TCATGA	2 cut(s)	358, 760
Cfr13I	GGNCC	3 cut(s)	10, 583, 584
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	9 cut(s)	26, 58, 182, 194, 359, 506, 589, 739, 761
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	3 cut(s)	51, 347, 681
DpnI	GATC	6 cut(s)	198, 270, 440, 597, 612, 621
DpnII	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
EaeI	YGGCCR	1 cut(s)	667
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	2 cut(s)	111, 884
Eco24I	GRGCYC	2 cut(s)	99, 587
Eco47I	GGWCC	1 cut(s)	10
EcoO109I	RGGNCCY	2 cut(s)	583, 584
EcoRII	CCWGG	3 cut(s)	33, 644, 669
EcoT14I	CCWWGG	2 cut(s)	111, 884
EcoT38I	GRGCYC	2 cut(s)	99, 587
ErhI	CCWWGG	2 cut(s)	111, 884
FaeI	CATG	9 cut(s)	29, 61, 185, 197, 362, 509, 592, 742, 764
FatI	CATG	9 cut(s)	25, 57, 181, 193, 358, 505, 588, 738, 760
FokI	GGATG	5 cut(s)	17, 50, 508, 811, 815
FriOI	GRGCYC	2 cut(s)	99, 587
FspBI	CTAG	1 cut(s)	720
HaeIII	GGCC	3 cut(s)	110, 585, 669
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	9 cut(s)	29, 61, 185, 197, 362, 509, 592, 742, 764
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	512, 563, 791
Hpy188I	TCNGA	6 cut(s)	79, 372, 471, 490, 610, 682
Hpy188III	TCNNGA	5 cut(s)	233, 359, 578, 614, 761
Hpy8I	GTNNAC	3 cut(s)	512, 563, 791
HpyAV	CCTTC	4 cut(s)	24, 100, 310, 737
HpyCH4III	ACNGT	3 cut(s)	295, 516, 560
HpyCH4IV	ACGT	2 cut(s)	334, 547
HpyCH4V	TGCA	5 cut(s)	61, 66, 505, 791, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 591
HpyF3I	CTNAG	3 cut(s)	51, 347, 681
HpySE526I	ACGT	2 cut(s)	334, 547
Hsp92II	CATG	9 cut(s)	29, 61, 185, 197, 362, 509, 592, 742, 764
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
LmnI	GCTCC	1 cut(s)	886
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	2 cut(s)	334, 547
MaeIII	GTNAC	5 cut(s)	160, 295, 775, 854, 904
MalI	GATC	6 cut(s)	198, 270, 440, 597, 612, 621
MboI	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
MboII	GAAGA	4 cut(s)	140, 448, 590, 924
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	4 cut(s)	99, 587, 727, 793
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	4 cut(s)	188, 241, 492, 550
MluNI	TGGCCA	1 cut(s)	669
MnlI	CCTC	9 cut(s)	79, 215, 339, 344, 477, 562, 574, 585, 882
Mox20I	TGGCCA	1 cut(s)	669
MroI	TCCGGA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	2 cut(s)	122, 707
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	35, 646, 671
MvaI	CCWGG	3 cut(s)	35, 646, 671
MwoI	GCNNNNNNNGC	2 cut(s)	67, 591
NdeII	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
NlaIII	CATG	9 cut(s)	29, 61, 185, 197, 362, 509, 592, 742, 764
NlaIV	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	5 cut(s)	160, 295, 775, 854, 904
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	2 cut(s)	358, 760
PasI	CCCWGGG	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	122
Psp6I	CCWGG	3 cut(s)	33, 644, 669
PspGI	CCWGG	3 cut(s)	33, 644, 669
PspN4I	GGNNCC	5 cut(s)	12, 32, 573, 585, 586
PspOMI	GGGCCC	1 cut(s)	583
PspPI	GGNCC	3 cut(s)	10, 583, 584
PsrI	GAACNNNNNNTAC	2 cut(s)	555, 587
PsuI	RGATCY	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	122, 707
Sau3AI	GATC	6 cut(s)	196, 268, 438, 595, 610, 619
Sau96I	GGNCC	3 cut(s)	10, 583, 584
ScrFI	CCNGG	3 cut(s)	35, 646, 671
SduI	GDGCHC	4 cut(s)	99, 587, 727, 793
SfaNI	GCATC	1 cut(s)	833
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	548
Sse9I	AATT	4 cut(s)	188, 241, 492, 550
SsiI	CCGC	2 cut(s)	8, 214
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	3 cut(s)	33, 644, 669
StyI	CCWWGG	2 cut(s)	111, 884
TaaI	ACNGT	3 cut(s)	295, 516, 560
TaiI	ACGT	2 cut(s)	337, 550
TaqI	TCGA	2 cut(s)	17, 840
TasI	AATT	4 cut(s)	188, 241, 492, 550
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	122, 707
Tru9I	TTAA	2 cut(s)	122, 707
TscAI	CASTG	2 cut(s)	68, 300
TseFI	GTSAC	5 cut(s)	160, 295, 775, 854, 904
Tsp45I	GTSAC	5 cut(s)	160, 295, 775, 854, 904
TspDTI	ATGAA	4 cut(s)	170, 375, 777, 853
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	68, 300
Van91I	CCANNNNNTGG	1 cut(s)	432
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	122
XapI	RAATTY	1 cut(s)	492
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.