Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495735.1

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

676 .. 1459

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtgtgatcttctttggtctgacccggatgatcgctgtggctggggtatctctcccagaggtgctggatatacttttggccaggacatatccgagcagttcaatcataccaataacttgaagttgattgctagagcacaccagctggtcatggagggttataactggggtcatgaacaaaaagttgtcaccatattcagtgcacccaactactgttaccgctgtggaaatatggcatcaatcctagaagtcgatgactgcaaaggtcacacattcattcagtttgagccagctccaaggaggggagagccagatgttacccgaagaacacctgattatttcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

115

Amino Acids

13.19

Weight (kDa)

5.44

Isoelectric Point (pI)

23.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AciI	CCGC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	103, 121
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	2 cut(s)	145, 293
AluI	AGCT	2 cut(s)	145, 293
Alw21I	GWGCWC	2 cut(s)	139, 205
Alw44I	GTGCAC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	79
ApaLI	GTGCAC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	139, 205
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	26
BfaI	CTAG	2 cut(s)	132, 245
Bme1390I	CCNGG	2 cut(s)	26, 83
BmrFI	CCNGG	2 cut(s)	26, 83
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	139, 205
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	302
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	139, 205
Bsp143I	GATC	2 cut(s)	7, 31
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	7, 31
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	2 cut(s)	10, 34
BstMBI	GATC	2 cut(s)	7, 31
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	24, 81
BstSLI	GKGCMC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	172
CviAII	CATG	2 cut(s)	151, 173
CviJI	RGCY	6 cut(s)	42, 81, 145, 289, 293, 310
CviKI_1	RGCY	6 cut(s)	42, 81, 145, 289, 293, 310
DpnI	GATC	2 cut(s)	9, 33
DpnII	GATC	2 cut(s)	7, 31
EaeI	YGGCCR	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	154, 176
FaiI	YATR	9 cut(s)	72, 89, 108, 152, 162, 174, 194, 233, 346
FatI	CATG	2 cut(s)	150, 172
FokI	GGATG	1 cut(s)	41
FspBI	CTAG	2 cut(s)	132, 245
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	154, 176
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	22, 94
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	203, 261
Hsp92II	CATG	2 cut(s)	154, 176
Kzo9I	GATC	2 cut(s)	7, 31
LmnI	GCTCC	1 cut(s)	298
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	132, 245
MaeIII	GTNAC	4 cut(s)	187, 215, 266, 316
MalI	GATC	2 cut(s)	9, 33
MboI	GATC	2 cut(s)	7, 31
MboII	GAAGA	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	139, 205
MlsI	TGGCCA	1 cut(s)	81
MluNI	TGGCCA	1 cut(s)	81
MnlI	CCTC	3 cut(s)	53, 148, 294
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	145, 222
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 83
MvaI	CCWGG	1 cut(s)	83
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	7, 31
NlaIII	CATG	2 cut(s)	154, 176
NmuCI	GTSAC	2 cut(s)	187, 266
PagI	TCATGA	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	7, 31
ScrFI	CCNGG	2 cut(s)	26, 83
SduI	GDGCHC	2 cut(s)	139, 205
SetI	ASST	5 cut(s)	64, 147, 268, 295, 334
SfaNI	GCATC	1 cut(s)	245
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	132, 245
StyD4I	CCNGG	2 cut(s)	24, 81
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	187, 266
Tsp45I	GTSAC	2 cut(s)	187, 266
TspDTI	ATGAA	2 cut(s)	189, 265
TspRI	CASTG	1 cut(s)	205
VneI	GTGCAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	132, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.