Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

14117021 .. 14123219

Gene Structure 6199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4047 bp

ATGTCACAAGATTCTCAGGGGATAAAGACGATTGAGCAGTGGAGATGGTCAGATATGCAAGGCCTTGAGCTTGTGACTGACCCTCCTCCTCCTTCTTCTTCTTCTTCTGACCCATCTAAAACCAACCCAACAACAACAACTGCTAAAGAGCCAAGAGAAGCTCAAGCAATGGAGAGCTCTGCTGAGCCAACAACAAAGAAGGAGTCTAATGACAGCGGTGGAGGTGAGAAGCCTGAGGCTGTTCCAAGCATAGGCTTCGGAGAGGTTTTCAGATTCGCTGATGGATTGGATTACGTTTTGATGGGAATTGGGTCTGTTGGCGCAATCGTGCATGGTTGTTCTCTGCCTATCTTTCTTCGCTTCTTTGCTGATCTTGTCAACTCTTTCGGGGCAAATGCGAATGACATGGACAAGATGATGCAAGAGGTTTTGAAGTATGCATTGTACTTTCTTGTTGTGGGAGCTGCAATATGGGCTTCTTCATGGGCAGAGATATCGTGTTGGATGTGGACCGGAGAAAGGCAATCGACCAAGATGAGGATCAAGTACCTTGAAGCTGCTTTGAGCCAGGACATTCAGTTTTTCGATACAGAGGTTCGAACCTCCGATGTCGTTTTTGCCATCAACACTGATGCAGTGATGGTCCAAGACGCTATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCGACATTTGTATCTGGATTTGTGGTGGGTTTCACTGCTGTGTGGCAATTAGCTCTTGTGACTCTAGCAGTGGTGCCCCTGATAGCTGTGATTGGAGCCATTCACACCACCACATTAGCCAAACTCTCAGGGAAGAGCCAAGAGGCTCTTTCACAAGCAGGACACACTGTAGAACAGACTGTAGTTCAAATTCGAGTTGTCATGTCGTACGTTGGGGAATCCAGAGCACTAGAAGCATACTCCTCAGCATTGAGAATTGCCCAGAAGCTTGGTTACAAGAGTGGATTTGCTAAAGGAATGGGACTTGGAGCAACTTACTTTGTAGTCTTCTGCTGTTATGCACTTCTTTTATGGTATGGGGGTTATCTTGTTAGGCACCACTTCACCAATGGAGGTCTTGCCATAGCCACCATGTTTTCGGTCATGATAGGTGGACTGGCTTTGGGACAATCTGCTCCAAGCATGGGCGCGTTTGCAAAGGCTAAAGTTGCAGCTGCCAAGATATTTCGGATCATTGACCACAAGCCAGGCATGGACCGAAACAGTGAATCAGGGGTTGAATTGGAATCTGTTACAGGACTAGTGGAGCTGAAAAATGTGGATTTCTCCTACCCATCAAGGCAGGATGTTCGTATTCTCAACAATTTCTCTTTGAATGTTCCGGCTGGAAAAACCATAGCTTTGGTCGGTAGCAGTGGCTCTGGTAAAAGCACTGTGGTCTCCCTCATTGAGAGATTTTATGACCCCTCCTCAGGACAAGTTCTGCTAGATGGACATGACATAAAGACATTGAAATTAAAGTGGCTAAGGCAGCAGATAGGGCTTGTGAGCCAAGAGCCTGCTCTGTTTGCTACCACCATTAAAGAGAATATACTTTTGGGGAGGCCTGATGCAGACCAAGTTGAGATTGAAGAAGCTGCCAGAGTTGCCAATGCTCATTCATTCATTGTCAAACTTCCTGATGGTTTTGATACTCAGGTAGGGGAAAGAGGAGTGCAACTGTCTGGAGGACAGAAGCAGAGGATAGCCATAGCAAGGGCAATGCTTAAAAACCCAGCAATCCTTCTCTTAGATGAGGCAACAAGTGCATTGGACTCTGAGTCGGAAAAGCTGGTGCAAGAAGCCCTGGACCGGTTTATGATAGGCAGAACAACTCTTGTCATTGCTCACCGCCTCTCAACCATTCGCAAAGCTGACCTTGTAGCTGTACTCCAGCAGGGAAGTGTTTCTGAAATTGGAACCCATGATGAACTCTTTTCTAAAGGAGACAATGGTGTTTATGCCAAGCTCATTCGAATGCAAGAGGCAGCTCATGAGACTGCTCTCAACAATGCCAGAAAGAGTAGTGCTAGGCCTTCTAGTGCAAGAAACTCTGTTAGCTCACCAATAATCGCCCGAAATTCTTCATACGGTCGATCACCATATTCACGCAGGCTCTCTGACTTTTCCACTTCTGATTTTAGTCTCTCCCTTGATGCCACACACCCCAATTACCGACTAGAAAAGCTTGCCTTCAAGGAGCAAGCCAGTTCCTTCTGGCGCCTTGCCAAGATGAACTCTCCTGAATGGGTGTATGCATTAGTTGGTTCAATTGGCTCTGTTGTTTGTGGTTCTCTTAGTGCTTTCTTTGCATATGTTCTTAGTGCAGTCCTCAGTGTCTACTACAATCCGGACCATGATTTCATGATCAAGCAAATTAATAAGTACTGCTATTTGTTAATTGGACTTTCATCAGCTGCACTACTCTTCAACACGCTACAACATTCTTTCTGGGATATTGTGGGAGAAAATCTTACAAAACGGGTGAGGGAGAAAATGCTGACAGCAGTGTTGAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGGCAGAATTGCAGCAAGGCTGGCCCTTGATGCCAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTTATTGTACAGAACACAGCACTCATGCTAGTTGCTTGCACTGCAGGATTTGTTTTGCAATGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTCCCTGTTGTTGTTGCCGCCACAGTTTTGCAGAAAATGTTCATGACTGGTTTCTCGGGAGACCTTGAAGCTGCACATGCCAAGGCCACCCAACTAGCTGGGGAGGCCATAGCCAATGTAAGGACTGTTGCTGCATTCAACTCCGAGGGAAAAATTGTTGGTCTCTTTTCCTCCAACCTGCAGATTCCCCTGCGTCGGTGTTTTTGGAAGGGTCAGATTGCTGGAAGTGGATTTGGGATAGCTCAGTTTGCACTTTATGCCTCCTATGCTCTAGGTCTTTGGTATGCTTCCTGGCTTGTAAAGCATGGAATCTCTGATTTCTCAAAGGCGATCCGAGTTTTCATGGTCCTCATGGTATCTGCTAACGGTGCAGCAGAGACACTAACCCTGGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCAATCAGTTTTTGAGCTCCTTGACCGCAAAACTGAAATTGAACCTGATGATATTGATGCTACTGCAGTGCCTGACCGTCTGCGTGGAGAAGTTGAGTTTAAGCATGTAGACTTTTCGTATCCTTCTCGACCTGATGTTCCTGTGTTTCGTGATCTCTCCCTCCGTGCCCGAGCAGGCAAGACTCTTGCTCTTGTTGGTCCTAGTGGGTGTGGAAAGAGCTCAGTCATTTCATTAGTACAGCGGTTTTACGACCCAACATCAGGAAGAGTTATTATTGATGGAAAGGATATTCGCAAATACAATCTCAAGTCTCTCAGAAGGCACATTGCTGTGGTTCCCCAGGAGCCATGCCTCTTTGCTACAACTATATATGAAAATATCGCTTATGGACACGAGTCAGCAACTGAGGCTGAGATCATTGAAGCTGCTAATCTAGCCAATGCTCACAAGTTTGTATCTGCATTGCCAGATGGCTACAAAACGTTTGTTGGGGAGAGGGGAATTCAACTATCTGGAGGACAGAAACAAAGGATTGCTATTGCCAGGGCTTTACTGAGGAAGGCAGAGCTTATGCTTCTCGATGAAGCCACAAGTGCACTTGACGCCGAGTCCGAGAGATCCATTCAAGAAGCTCTGGAGCGCGCTTGTTCAGGAAAAACCACAATTGTGGTTGCACACAGACTATCAACTATTAGAAATGCCAATGTTATTGCAGTAATTGATGATGGGAAAGTGGCAGAGCAAGGATCACACAACCATCTATTGAAAAACTACCCGGACGGGTGTTACGCGCGCATGATACAGCTACAAAGATTTTCACACAGCCAGGCCATTGGAATAGCATCAGGTTCAAGTTCTTCAGTAAGACCAAGGGAAGAGGAAGAAAGAGAAGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

1348

Amino Acids

146.93

Weight (kDa)

7.6

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	103 - 374	4.7e-53	ABC transporter transmembrane region
ABC_tran	PF00005	443 - 592	3.4e-35	ABC transporter
ABC_membrane	PF00664	761 - 1027	5.9e-53	ABC transporter transmembrane region
ABC_tran	PF00005	1099 - 1247	2.4e-34	ABC transporter
SMC_N	PF02463	1135 - 1287	5.2e-06	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2910
AccB1I	GGYRCC	4 cut(s)	763, 1065, 2229, 2697
AccI	GTMKAC	2 cut(s)	2349, 3255
AccII	CGCG	4 cut(s)	1160, 3789, 3938, 3940
AccIII	TCCGGA	1 cut(s)	2359
AciI	CCGC	5 cut(s)	216, 1861, 2742, 3172, 3388
AclI	AACGTT	1 cut(s)	3629
AclWI	GGATC	5 cut(s)	548, 1208, 3049, 3759, 3901
AcsI	RAATTY	3 cut(s)	879, 2089, 3648
AcuI	CTGAAG	1 cut(s)	3990
AcyI	GRCGYC	3 cut(s)	2230, 2698, 3750
AfaI	GTAC	7 cut(s)	446, 548, 899, 1899, 2396, 2643, 3384
AgeI	ACCGGT	1 cut(s)	1821
AhdI	GACNNNNNGTC	2 cut(s)	1789, 3754
AhlI	ACTAGT	1 cut(s)	1270
AjnI	CCWGG	8 cut(s)	567, 1216, 1815, 3014, 3111, 3486, 3689, 3972
AjuI	GAANNNNNNNTTGG	2 cut(s)	1550, 1582
AleI	CACNNNNGTG	2 cut(s)	728, 3812
Alw21I	GWGCWC	5 cut(s)	179, 919, 3165, 3368, 3745
Alw26I	GTCTC	9 cut(s)	1414, 1950, 2000, 2159, 2616, 2778, 2891, 3095, 3462
Alw44I	GTGCAC	1 cut(s)	3741
AlwI	GGATC	5 cut(s)	548, 1208, 3049, 3759, 3901
AlwNI	CAGNNNCTG	2 cut(s)	3218, 3551
Ama87I	CYCGRG	2 cut(s)	2779, 3315
Aor13HI	TCCGGA	1 cut(s)	2359
AoxI	GGCC	7 cut(s)	61, 1574, 2042, 2586, 2808, 2829, 3975
ApaLI	GTGCAC	1 cut(s)	3741
ApoI	RAATTY	3 cut(s)	879, 2089, 3648
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	2388
AsiGI	ACCGGT	1 cut(s)	1821
Asp700I	GAANNNNTTC	3 cut(s)	1915, 2092, 2762
AspLEI	GCGC	8 cut(s)	323, 1160, 2232, 2700, 3789, 3791, 3940, 3942
AspS9I	GGNCC	8 cut(s)	510, 643, 1225, 1819, 2362, 2587, 3070, 3344
AsuC2I	CCSGG	1 cut(s)	3923
AsuHPI	GGTGA	6 cut(s)	236, 1066, 1850, 2064, 2100, 2506
AsuII	TTCGAA	2 cut(s)	598, 1984
AvaI	CYCGRG	2 cut(s)	2779, 3315
AvaII	GGWCC	7 cut(s)	510, 643, 1225, 1819, 2362, 3070, 3344
AxyI	CCTNAGG	2 cut(s)	234, 1441
BaeGI	GKGCMC	3 cut(s)	768, 3316, 3745
BaeI	ACNNNNGTAYC	6 cut(s)	579, 612, 684, 717, 1653, 1686
BanI	GGYRCC	4 cut(s)	763, 1065, 2229, 2697
BanII	GRGCYC	3 cut(s)	179, 3165, 3368
BarI	GAAGNNNNNNTAC	2 cut(s)	947, 979
BauI	CACGAG	1 cut(s)	3539
BbsI	GAAGAC	2 cut(s)	1009, 2716
Bbv12I	GWGCWC	5 cut(s)	179, 919, 3165, 3368, 3745
BbvCI	CCTCAGC	1 cut(s)	934
BcgI	CGANNNNNNTGC	6 cut(s)	238, 272, 477, 511, 1301, 1335
BciT130I	CCWGG	8 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3974
BciVI	GTATCC	1 cut(s)	3276
BclI	TGATCA	2 cut(s)	2376, 2545
BcnI	CCSGG	1 cut(s)	3923
BcoDI	GTCTC	9 cut(s)	1414, 1950, 2000, 2159, 2616, 2778, 2891, 3095, 3462
BcuI	ACTAGT	1 cut(s)	1270
BfmI	CTRYAG	5 cut(s)	858, 870, 2676, 2903, 3210
BfoI	RGCGCY	2 cut(s)	2233, 2701
BfuAI	ACCTGC	1 cut(s)	2910
BfuI	GTATCC	1 cut(s)	3276
BlpI	GCTNAGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	2396
Bme1390I	CCNGG	9 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3923, 3974
Bme18I	GGWCC	7 cut(s)	510, 643, 1225, 1819, 2362, 3070, 3344
BmeRI	GACNNNNNGTC	2 cut(s)	1789, 3754
BmeT110I	CYCGRG	2 cut(s)	2779, 3315
BmgT120I	GGNCC	8 cut(s)	510, 643, 1225, 1819, 2362, 2587, 3070, 3344
BmiI	GGNNCC	9 cut(s)	765, 787, 1067, 1930, 2231, 2699, 3117, 3483, 3492
BmrFI	CCNGG	9 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3923, 3974
BmsI	GCATC	7 cut(s)	408, 622, 1570, 2155, 2584, 3193, 3998
BoxI	GACNNNNGTC	1 cut(s)	3541
BpiI	GAAGAC	2 cut(s)	1009, 2716
BpmI	CTGGAG	4 cut(s)	1716, 1886, 3681, 3803
Bpu10I	CCTNAGC	2 cut(s)	934, 1496
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	2 cut(s)	598, 1984
BpuEI	CTTGAG	3 cut(s)	86, 147, 3437
BpuMI	CCSGG	1 cut(s)	3923
BsaBI	GATNNNNATC	1 cut(s)	539
BsaHI	GRCGYC	3 cut(s)	2230, 2698, 3750
BsaI	GGTCTC	3 cut(s)	1414, 2778, 2891
BsaJI	CCNNGG	7 cut(s)	1815, 2805, 2868, 3111, 3486, 3690, 4016
BsaWI	WCCGGW	3 cut(s)	512, 1821, 2359
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 3100, 3130
Bse118I	RCCGGY	1 cut(s)	1821
Bse1I	ACTGG	3 cut(s)	1131, 2217, 2776
Bse21I	CCTNAGG	2 cut(s)	234, 1441
Bse3DI	GCAATG	6 cut(s)	174, 1737, 1851, 2699, 3471, 3608
Bse8I	GATNNNNATC	1 cut(s)	539
BseAI	TCCGGA	1 cut(s)	2359
BseBI	CCWGG	8 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3974
BseDI	CCNNGG	7 cut(s)	1815, 2805, 2868, 3111, 3486, 3690, 4016
BseGI	GGATG	2 cut(s)	510, 1321
BseJI	GATNNNNATC	1 cut(s)	539
BseMI	GCAATG	6 cut(s)	174, 1737, 1851, 2699, 3471, 3608
BseNI	ACTGG	3 cut(s)	1131, 2217, 2776
BsePI	GCGCGC	2 cut(s)	3787, 3938
BseRI	GAGGAG	5 cut(s)	75, 78, 922, 1429, 1695
BseSI	GKGCMC	3 cut(s)	768, 3316, 3745
BseYI	CCCAGC	2 cut(s)	1744, 2822
BsgI	GTGCAG	4 cut(s)	2355, 2412, 2781, 3114
Bsh1236I	CGCG	4 cut(s)	1160, 3789, 3938, 3940
Bsh1285I	CGRYCG	1 cut(s)	2104
BshFI	GGCC	7 cut(s)	63, 1576, 2044, 2588, 2810, 2831, 3977
BshNI	GGYRCC	4 cut(s)	763, 1065, 2229, 2697
BshTI	ACCGGT	1 cut(s)	1821
BsiEI	CGRYCG	1 cut(s)	2104
BsiHKAI	GWGCWC	5 cut(s)	179, 919, 3165, 3368, 3745
BsiHKCI	CYCGRG	2 cut(s)	2779, 3315
BsiSI	CCGG	5 cut(s)	513, 1352, 1822, 2360, 3923
BsiWI	CGTACG	1 cut(s)	897
BslFI	GGGAC	2 cut(s)	1005, 1149
BsmAI	GTCTC	9 cut(s)	1414, 1950, 2000, 2159, 2616, 2778, 2891, 3095, 3462
BsmFI	GGGAC	2 cut(s)	1005, 1149
BsmI	GAATGC	2 cut(s)	1992, 2858
BsnI	GGCC	7 cut(s)	63, 1576, 2044, 2588, 2810, 2831, 3977
Bso31I	GGTCTC	3 cut(s)	1414, 2778, 2891
BsoBI	CYCGRG	2 cut(s)	2779, 3315
Bsp119I	TTCGAA	2 cut(s)	598, 1984
Bsp1286I	GDGCHC	7 cut(s)	179, 768, 919, 3165, 3316, 3368, 3745
Bsp13I	TCCGGA	1 cut(s)	2359
Bsp1407I	TGTACA	1 cut(s)	2641
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	5 cut(s)	216, 1861, 2742, 3172, 3388
BspANI	GGCC	7 cut(s)	63, 1576, 2044, 2588, 2810, 2831, 3977
BspEI	TCCGGA	1 cut(s)	2359
BspFNI	CGCG	4 cut(s)	1160, 3789, 3938, 3940
BspHI	TCATGA	4 cut(s)	1113, 2002, 2373, 2766
BspLI	GGNNCC	9 cut(s)	765, 787, 1067, 1930, 2231, 2699, 3117, 3483, 3492
BspMAI	CTGCAG	3 cut(s)	2680, 2907, 3214
BspMI	ACCTGC	1 cut(s)	2910
BspPI	GGATC	5 cut(s)	548, 1208, 3049, 3759, 3901
BspQI	GCTCTTC	1 cut(s)	818
BspT104I	TTCGAA	2 cut(s)	598, 1984
BspT107I	GGYRCC	4 cut(s)	763, 1065, 2229, 2697
BspTNI	GGTCTC	3 cut(s)	1414, 2778, 2891
BsrDI	GCAATG	6 cut(s)	174, 1737, 1851, 2699, 3471, 3608
BsrFI	RCCGGY	1 cut(s)	1821
BsrGI	TGTACA	1 cut(s)	2641
BsrI	ACTGG	3 cut(s)	1131, 2217, 2776
BssAI	RCCGGY	1 cut(s)	1821
BssECI	CCNNGG	7 cut(s)	1815, 2805, 2868, 3111, 3486, 3690, 4016
BssHII	GCGCGC	2 cut(s)	3787, 3938
BssNI	GRCGYC	3 cut(s)	2230, 2698, 3750
BssSI	CACGAG	1 cut(s)	3539
BssT1I	CCWWGG	2 cut(s)	2805, 4016
Bst2BI	CACGAG	1 cut(s)	3539
Bst2UI	CCWGG	8 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3974
Bst6I	CTCTTC	4 cut(s)	818, 2441, 3406, 4017
BstACI	GRCGYC	3 cut(s)	2230, 2698, 3750
BstAPI	GCANNNNNTGC	2 cut(s)	1775, 2981
BstAUI	TGTACA	1 cut(s)	2641
BstBI	TTCGAA	2 cut(s)	598, 1984
BstC8I	GCNNGC	9 cut(s)	1530, 2123, 2199, 2214, 2586, 2671, 3322, 3789, 3940
BstF5I	GGATG	2 cut(s)	510, 1321
BstFNI	CGCG	4 cut(s)	1160, 3789, 3938, 3940
BstH2I	RGCGCY	2 cut(s)	2233, 2701
BstHHI	GCGC	8 cut(s)	323, 1160, 2232, 2700, 3789, 3791, 3940, 3942
BstMAI	GTCTC	9 cut(s)	1414, 1950, 2000, 2159, 2616, 2778, 2891, 3095, 3462
BstMCI	CGRYCG	1 cut(s)	2104
BstNI	CCWGG	8 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3974
BstNSI	RCATGY	2 cut(s)	2804, 3254
BstPAI	GACNNNNGTC	1 cut(s)	3541
BstSCI	CCNGG	9 cut(s)	567, 1216, 1815, 3014, 3111, 3486, 3689, 3921, 3972
BstSFI	CTRYAG	5 cut(s)	858, 870, 2676, 2903, 3210
BstSLI	GKGCMC	3 cut(s)	768, 3316, 3745
BstUI	CGCG	4 cut(s)	1160, 3789, 3938, 3940
BstV2I	GAAGAC	2 cut(s)	1009, 2716
BstX2I	RGATCY	1 cut(s)	3764
BstXI	CCANNNNNNTGG	5 cut(s)	959, 1372, 2822, 3814, 3980
BstYI	RGATCY	1 cut(s)	3764
Bsu36I	CCTNAGG	2 cut(s)	234, 1441
BsuI	GTATCC	1 cut(s)	3276
BsuRI	GGCC	7 cut(s)	63, 1576, 2044, 2588, 2810, 2831, 3977
BtsCI	GGATG	2 cut(s)	510, 1321
BtsI	GCAGTG	8 cut(s)	44, 642, 723, 765, 1390, 2523, 2673, 3219
BveI	ACCTGC	1 cut(s)	2910
Cac8I	GCNNGC	9 cut(s)	1530, 2123, 2199, 2214, 2586, 2671, 3322, 3789, 3940
CaiI	CAGNNNCTG	2 cut(s)	3218, 3551
CciI	TCATGA	4 cut(s)	1113, 2002, 2373, 2766
CfoI	GCGC	8 cut(s)	323, 1160, 2232, 2700, 3789, 3791, 3940, 3942
Cfr10I	RCCGGY	1 cut(s)	1821
Cfr13I	GGNCC	8 cut(s)	510, 643, 1225, 1819, 2362, 2587, 3070, 3344
CseI	GACGC	3 cut(s)	659, 2906, 3758
Csp6I	GTAC	7 cut(s)	445, 547, 898, 1898, 2395, 2642, 3383
CspAI	ACCGGT	1 cut(s)	1821
CviQI	GTAC	7 cut(s)	445, 547, 898, 1898, 2395, 2642, 3383
DinI	GGCGCC	2 cut(s)	2231, 2699
DriI	GACNNNNNGTC	2 cut(s)	1789, 3754
Eam1104I	CTCTTC	4 cut(s)	818, 2441, 3406, 4017
Eam1105I	GACNNNNNGTC	2 cut(s)	1789, 3754
EarI	CTCTTC	4 cut(s)	818, 2441, 3406, 4017
Ecl136II	GAGCTC	3 cut(s)	177, 3163, 3366
Eco130I	CCWWGG	2 cut(s)	2805, 4016
Eco147I	AGGCCT	3 cut(s)	63, 1576, 2044
Eco24I	GRGCYC	3 cut(s)	179, 3165, 3368
Eco31I	GGTCTC	3 cut(s)	1414, 2778, 2891
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	7 cut(s)	510, 643, 1225, 1819, 2362, 3070, 3344
Eco53kI	GAGCTC	3 cut(s)	177, 3163, 3366
Eco57I	CTGAAG	1 cut(s)	3990
Eco81I	CCTNAGG	2 cut(s)	234, 1441
Eco88I	CYCGRG	2 cut(s)	2779, 3315
EcoICRI	GAGCTC	3 cut(s)	177, 3163, 3366
EcoRI	GAATTC	1 cut(s)	3648
EcoRII	CCWGG	8 cut(s)	567, 1216, 1815, 3014, 3111, 3486, 3689, 3972
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	2805, 4016
EcoT22I	ATGCAT	2 cut(s)	442, 2269
EcoT38I	GRGCYC	3 cut(s)	179, 3165, 3368
EgeI	GGCGCC	2 cut(s)	2231, 2699
EheI	GGCGCC	2 cut(s)	2231, 2699
ErhI	CCWWGG	2 cut(s)	2805, 4016
FalI	AAGNNNNNCTT	6 cut(s)	822, 854, 1872, 1904, 2186, 2218
FaqI	GGGAC	2 cut(s)	1005, 1149
FauNDI	CATATG	1 cut(s)	2323
FbaI	TGATCA	2 cut(s)	2376, 2545
FblI	GTMKAC	2 cut(s)	2349, 3255
FokI	GGATG	2 cut(s)	517, 1328
FriOI	GRGCYC	3 cut(s)	179, 3165, 3368
GlaI	GCGC	8 cut(s)	322, 1159, 2231, 2699, 3788, 3790, 3939, 3941
GsaI	CCCAGC	2 cut(s)	1748, 2826
GsuI	CTGGAG	4 cut(s)	1716, 1886, 3681, 3803
HaeII	RGCGCY	2 cut(s)	2233, 2701
HaeIII	GGCC	7 cut(s)	63, 1576, 2044, 2588, 2810, 2831, 3977
HapII	CCGG	5 cut(s)	513, 1352, 1822, 2360, 3923
HgaI	GACGC	3 cut(s)	659, 2906, 3758
HhaI	GCGC	8 cut(s)	323, 1160, 2232, 2700, 3789, 3791, 3940, 3942
Hin1I	GRCGYC	3 cut(s)	2230, 2698, 3750
Hin6I	GCGC	8 cut(s)	321, 1158, 2230, 2698, 3787, 3789, 3938, 3940
HinP1I	GCGC	8 cut(s)	321, 1158, 2230, 2698, 3787, 3789, 3938, 3940
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	2 cut(s)	956, 2195
HpaII	CCGG	5 cut(s)	513, 1352, 1822, 2360, 3923
HphI	GGTGA	6 cut(s)	236, 1066, 1850, 2064, 2100, 2506
Hpy166II	GTNNAC	6 cut(s)	379, 510, 1124, 2350, 3256, 3743
Hpy8I	GTNNAC	6 cut(s)	379, 510, 1124, 2350, 3256, 3743
Hpy99I	CGWCG	1 cut(s)	2922
HpyCH4IV	ACGT	3 cut(s)	294, 900, 3629
HpySE526I	ACGT	3 cut(s)	294, 900, 3629
Hsp92I	GRCGYC	3 cut(s)	2230, 2698, 3750
HspAI	GCGC	8 cut(s)	321, 1158, 2230, 2698, 3787, 3789, 3938, 3940
KasI	GGCGCC	2 cut(s)	2229, 2697
Kpn2I	TCCGGA	1 cut(s)	2359
Ksp22I	TGATCA	2 cut(s)	2376, 2545
LguI	GCTCTTC	1 cut(s)	818
LweI	GCATC	7 cut(s)	408, 622, 1570, 2155, 2584, 3193, 3998
MaeII	ACGT	3 cut(s)	294, 900, 3629
MaeIII	GTNAC	6 cut(s)	3, 73, 748, 962, 1261, 3932
MfeI	CAATTG	2 cut(s)	2280, 3810
MflI	RGATCY	1 cut(s)	3764
MhlI	GDGCHC	7 cut(s)	179, 768, 919, 3165, 3316, 3368, 3745
Mly113I	GGCGCC	2 cut(s)	2230, 2698
MlyI	GAGTC	7 cut(s)	212, 745, 1778, 1799, 3322, 3551, 3764
MmeI	TCCRAC	3 cut(s)	482, 1773, 2922
Mph1103I	ATGCAT	2 cut(s)	442, 2269
MroI	TCCGGA	1 cut(s)	2359
MroXI	GAANNNNTTC	3 cut(s)	1915, 2092, 2762
MseI	TTAA	7 cut(s)	1487, 1551, 1737, 2388, 2408, 3129, 3246
MslI	CAYNNNNRTG	4 cut(s)	728, 1985, 3476, 3812
MspA1I	CMGCKG	4 cut(s)	216, 1184, 2426, 3388
MspI	CCGG	5 cut(s)	513, 1352, 1822, 2360, 3923
MspR9I	CCNGG	9 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3923, 3974
MunI	CAATTG	2 cut(s)	2280, 3810
Mva1269I	GAATGC	2 cut(s)	1992, 2858
MvaI	CCWGG	8 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3974
MvnI	CGCG	4 cut(s)	1160, 3789, 3938, 3940
NarI	GGCGCC	2 cut(s)	2230, 2698
NciI	CCSGG	1 cut(s)	3923
NdeI	CATATG	1 cut(s)	2323
NlaIV	GGNNCC	9 cut(s)	765, 787, 1067, 1930, 2231, 2699, 3117, 3483, 3492
NmeAIII	GCCGAG	1 cut(s)	3778
NmuCI	GTSAC	3 cut(s)	3, 73, 748
NsiI	ATGCAT	2 cut(s)	442, 2269
NspI	RCATGY	2 cut(s)	2804, 3254
NspV	TTCGAA	2 cut(s)	598, 1984
OliI	CACNNNNGTG	2 cut(s)	728, 3812
PagI	TCATGA	4 cut(s)	1113, 2002, 2373, 2766
PauI	GCGCGC	2 cut(s)	3787, 3938
PceI	AGGCCT	3 cut(s)	63, 1576, 2044
PciSI	GCTCTTC	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	2 cut(s)	657, 3756
PctI	GAATGC	2 cut(s)	1992, 2858
PdmI	GAANNNNTTC	3 cut(s)	1915, 2092, 2762
PfeI	GAWTC	7 cut(s)	11, 273, 908, 1238, 1256, 2908, 3033
Pfl23II	CGTACG	1 cut(s)	897
PinAI	ACCGGT	1 cut(s)	1821
PleI	GAGTC	7 cut(s)	211, 745, 1778, 1798, 3322, 3550, 3763
PluTI	GGCGCC	2 cut(s)	2233, 2701
PpsI	GAGTC	7 cut(s)	211, 745, 1778, 1798, 3322, 3550, 3763
PshAI	GACNNNNGTC	1 cut(s)	3541
PshBI	ATTAAT	1 cut(s)	2388
Psp124BI	GAGCTC	3 cut(s)	179, 3165, 3368
Psp1406I	AACGTT	1 cut(s)	3629
Psp6I	CCWGG	8 cut(s)	567, 1216, 1815, 3014, 3111, 3486, 3689, 3972
PspFI	CCCAGC	2 cut(s)	1744, 2822
PspGI	CCWGG	8 cut(s)	567, 1216, 1815, 3014, 3111, 3486, 3689, 3972
PspLI	CGTACG	1 cut(s)	897
PspN4I	GGNNCC	9 cut(s)	765, 787, 1067, 1930, 2231, 2699, 3117, 3483, 3492
PspPI	GGNCC	8 cut(s)	510, 643, 1225, 1819, 2362, 2587, 3070, 3344
PstI	CTGCAG	3 cut(s)	2680, 2907, 3214
PstNI	CAGNNNCTG	2 cut(s)	3218, 3551
PsuI	RGATCY	1 cut(s)	3764
PteI	GCGCGC	2 cut(s)	3787, 3938
PvuII	CAGCTG	2 cut(s)	1184, 2426
RsaI	GTAC	7 cut(s)	446, 548, 899, 1899, 2396, 2643, 3384
RsaNI	GTAC	7 cut(s)	445, 547, 898, 1898, 2395, 2642, 3383
RseI	CAYNNNNRTG	4 cut(s)	728, 1985, 3476, 3812
SacI	GAGCTC	3 cut(s)	179, 3165, 3368
SapI	GCTCTTC	1 cut(s)	818
SaqAI	TTAA	7 cut(s)	1487, 1551, 1737, 2388, 2408, 3129, 3246
Sau96I	GGNCC	8 cut(s)	510, 643, 1225, 1819, 2362, 2587, 3070, 3344
ScaI	AGTACT	1 cut(s)	2396
SchI	GAGTC	7 cut(s)	212, 745, 1778, 1799, 3322, 3551, 3764
ScrFI	CCNGG	9 cut(s)	569, 1218, 1817, 3016, 3113, 3488, 3691, 3923, 3974
SduI	GDGCHC	7 cut(s)	179, 768, 919, 3165, 3316, 3368, 3745
SfaNI	GCATC	7 cut(s)	408, 622, 1570, 2155, 2584, 3193, 3998
SfcI	CTRYAG	5 cut(s)	858, 870, 2676, 2903, 3210
SfoI	GGCGCC	2 cut(s)	2231, 2699
SfuI	TTCGAA	2 cut(s)	598, 1984
SinI	GGWCC	7 cut(s)	510, 643, 1225, 1819, 2362, 3070, 3344
SmiMI	CAYNNNNRTG	4 cut(s)	728, 1985, 3476, 3812
SmlI	CTYRAG	3 cut(s)	65, 162, 3452
SmoI	CTYRAG	3 cut(s)	65, 162, 3452
SpeI	ACTAGT	1 cut(s)	1270
SseBI	AGGCCT	3 cut(s)	63, 1576, 2044
SsiI	CCGC	5 cut(s)	216, 1861, 2742, 3172, 3388
SspDI	GGCGCC	2 cut(s)	2229, 2697
SstI	GAGCTC	3 cut(s)	179, 3165, 3368
StuI	AGGCCT	3 cut(s)	63, 1576, 2044
StyD4I	CCNGG	9 cut(s)	567, 1216, 1815, 3014, 3111, 3486, 3689, 3921, 3972
StyI	CCWWGG	2 cut(s)	2805, 4016
TaiI	ACGT	3 cut(s)	297, 903, 3632
TaqI	TCGA	9 cut(s)	527, 585, 598, 883, 1984, 2104, 3139, 3274, 3726
TaqII	GACCGA	2 cut(s)	1099, 1242
TatI	WGTACW	5 cut(s)	444, 1897, 2394, 2641, 3382
TauI	GCSGC	1 cut(s)	2744
TfiI	GAWTC	7 cut(s)	11, 273, 908, 1238, 1256, 2908, 3033
Tru1I	TTAA	7 cut(s)	1487, 1551, 1737, 2388, 2408, 3129, 3246
Tru9I	TTAA	7 cut(s)	1487, 1551, 1737, 2388, 2408, 3129, 3246
TseFI	GTSAC	3 cut(s)	3, 73, 748
Tsp45I	GTSAC	3 cut(s)	3, 73, 748
TspGWI	ACGGA	1 cut(s)	3299
VneI	GTGCAC	1 cut(s)	3741
VpaK11BI	GGWCC	7 cut(s)	510, 643, 1225, 1819, 2362, 3070, 3344
VspI	ATTAAT	1 cut(s)	2388
XapI	RAATTY	3 cut(s)	879, 2089, 3648
XceI	RCATGY	2 cut(s)	2804, 3254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1076
XmiI	GTMKAC	2 cut(s)	2349, 3255
XmnI	GAANNNNTTC	3 cut(s)	1915, 2092, 2762
ZrmI	AGTACT	1 cut(s)	2396
Zsp2I	ATGCAT	2 cut(s)	442, 2269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.