Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

5923211 .. 5929636

Gene Structure 6426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1052900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGCGTGAATTCGGTATCGACGGACACGAGCAGCGATCTGAACGAGCAGATCGAGCAACTCATGCAATGCAAGCCACTCTCAGAGCAACAGGTGAGAATGTTATGCGAGAAAGCAAAGGAAATTCTAATGGGAGAAAGCAATGTTCAGCCTGTGAAAAGCCCAGTGACAATTTGTGGCGATATTCATGGACAGTTTCACGACCTTGCAGAGCTTTTTCGAATTGGAGGGAAGTGTCCTGATACCAATTACTTGTTTATGGGAGATTACGTGGACCGTGGCTATTACTCTGTTGAAACCGTGACGCTCTTAGTGGCCCTGAAAGTGCGTTATCCTCAGCGAATCACTATTCTCAGGGGAAACCATGAAAGTCGTCAGATTACCCAGGTTTATGGATTTTATGATGAATGTCTCCGAAAGTATGGAAATGCCAATGTTTGGAAGATCTTCACCGACCTTTTTGACTACTTTCCACTGACAGCATTGGTTGAGTCAGAAATATTTTGCCTGCATGGTGGATTGTCCCCTTCAATTGAAAACCTTGATAACATAAGGAATTTTGACCGTGTTCAAGAGGTTCCACATGAAGGGCCGATGTGTGATCTGTTATGGTCTGACCCAGATGACCGATGTGGTTGGGGTATTTCACCTCGCGGTGCAGGATATACTTTTGGCCAGGATATATCTGAACAATTTAATCATACAAACAATTTAAAGTTGATTGCAAGAGCTCATCAGTTGGTTATGGATGGATTCAACTGGGCACATGAACAAAAGGTGGTTACTATATTTAGTGCACCTAATTACTGCTATCGCTGTGGGAACATGGCCTCTGTTTTAGAAGTCGATGACTGCAGGGGCCATACCTTCATTCAGTTTGAGCCAGCTCCGAGGAGAGGAGAGCCAGATGTTACGCGTAGAACACCCGATTACTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048863 GO:0048869 GO:0071704 GO:0071944 GO:0080022 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

314

Amino Acids

35.76

Weight (kDa)

5.13

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	55 - 248	6.8e-47	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	2 cut(s)	654, 916
AciI	CCGC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	3 cut(s)	10, 123, 556
AfiI	CCNNNNNNNGG	3 cut(s)	438, 587, 896
AflIII	ACRYGT	1 cut(s)	914
AgsI	TTSAA	5 cut(s)	296, 531, 536, 572, 757
AjnI	CCWGG	2 cut(s)	384, 675
AluBI	AGCT	3 cut(s)	214, 731, 887
AluI	AGCT	3 cut(s)	214, 731, 887
Alw21I	GWGCWC	2 cut(s)	733, 799
Alw26I	GTCTC	1 cut(s)	416
Alw44I	GTGCAC	1 cut(s)	795
AoxI	GGCC	5 cut(s)	315, 590, 673, 828, 859
ApaLI	GTGCAC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	3 cut(s)	10, 123, 556
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	4 cut(s)	274, 316, 590, 859
AsuHPI	GGTGA	3 cut(s)	106, 442, 639
AsuII	TTCGAA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	766, 799
BalI	TGGCCA	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	733, 799
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	743
BciT130I	CCWGG	2 cut(s)	386, 677
BcoDI	GTCTC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	853
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	386, 677
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	4 cut(s)	274, 316, 590, 859
BmiI	GGNNCC	2 cut(s)	579, 860
BmrFI	CCNGG	2 cut(s)	386, 677
BmrI	ACTGGG	2 cut(s)	158, 769
BmuI	ACTGGG	2 cut(s)	158, 769
Bpu10I	CCTNAGC	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	3 cut(s)	277, 384, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 587, 896
Bse1I	ACTGG	2 cut(s)	164, 764
Bse3DI	GCAATG	2 cut(s)	74, 148
BseBI	CCWGG	2 cut(s)	386, 677
BseDI	CCNNGG	3 cut(s)	277, 384, 890
BseGI	GGATG	1 cut(s)	754
BseLI	CCNNNNNNNGG	3 cut(s)	438, 587, 896
BseMI	GCAATG	2 cut(s)	74, 148
BseMII	CTCAG	3 cut(s)	96, 350, 367
BseNI	ACTGG	2 cut(s)	164, 764
BseRI	GAGGAG	2 cut(s)	907, 912
BseSI	GKGCMC	2 cut(s)	766, 799
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	2 cut(s)	654, 916
BshFI	GGCC	5 cut(s)	317, 592, 675, 830, 861
BsiHKAI	GWGCWC	2 cut(s)	733, 799
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	438, 587, 896
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	5 cut(s)	317, 592, 675, 830, 861
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	733, 766, 799
Bsp143I	GATC	4 cut(s)	37, 51, 444, 601
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	5 cut(s)	317, 592, 675, 830, 861
BspCNI	CTCAG	3 cut(s)	95, 349, 366
BspFNI	CGCG	2 cut(s)	654, 916
BspLI	GGNNCC	2 cut(s)	579, 860
BspMAI	CTGCAG	1 cut(s)	857
BspT104I	TTCGAA	1 cut(s)	220
BsrDI	GCAATG	2 cut(s)	74, 148
BsrI	ACTGG	2 cut(s)	164, 764
BssECI	CCNNGG	3 cut(s)	277, 384, 890
BssMI	GATC	4 cut(s)	37, 51, 444, 601
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	386, 677
Bst4CI	ACNGT	4 cut(s)	195, 278, 301, 566
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	74, 509, 885
BstDEI	CTNAG	4 cut(s)	82, 310, 336, 353
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	754
BstFNI	CGCG	2 cut(s)	654, 916
BstKTI	GATC	4 cut(s)	40, 54, 447, 604
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	37, 51, 444, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
BstNI	CCWGG	2 cut(s)	386, 677
BstSCI	CCNGG	2 cut(s)	384, 675
BstSFI	CTRYAG	1 cut(s)	853
BstSLI	GKGCMC	2 cut(s)	766, 799
BstUI	CGCG	2 cut(s)	654, 916
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	317, 592, 675, 830, 861
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	754
BtsIMutI	CAGTG	2 cut(s)	171, 473
Cac8I	GCNNGC	3 cut(s)	74, 509, 885
Cfr13I	GGNCC	4 cut(s)	274, 316, 590, 859
CseI	GACGC	1 cut(s)	313
CviAII	CATG	7 cut(s)	64, 188, 365, 512, 584, 767, 826
DdeI	CTNAG	4 cut(s)	82, 310, 336, 353
DpnI	GATC	4 cut(s)	39, 53, 446, 603
DpnII	GATC	4 cut(s)	37, 51, 444, 601
DraI	TTTAAA	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	673
Ecl136II	GAGCTC	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	384, 675
EcoT38I	GRGCYC	1 cut(s)	733
FaeI	CATG	7 cut(s)	67, 191, 368, 515, 587, 770, 829
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	7 cut(s)	63, 187, 364, 511, 583, 766, 825
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	761
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	317, 592, 675, 830, 861
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	7 cut(s)	67, 191, 368, 515, 587, 770, 829
HinfI	GANTC	3 cut(s)	342, 491, 753
HphI	GGTGA	3 cut(s)	106, 442, 639
Hpy166II	GTNNAC	2 cut(s)	274, 797
Hpy188I	TCNGA	8 cut(s)	42, 85, 378, 416, 496, 616, 688, 891
Hpy188III	TCNNGA	3 cut(s)	200, 239, 572
Hpy8I	GTNNAC	2 cut(s)	274, 797
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	537, 581, 877
HpyCH4III	ACNGT	4 cut(s)	195, 278, 301, 566
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	8 cut(s)	67, 72, 209, 511, 659, 725, 797, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
HpyF3I	CTNAG	4 cut(s)	82, 310, 336, 353
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	7 cut(s)	67, 191, 368, 515, 587, 770, 829
Kzo9I	GATC	4 cut(s)	37, 51, 444, 601
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	166, 301, 781, 910
MalI	GATC	4 cut(s)	39, 53, 446, 603
MboI	GATC	4 cut(s)	37, 51, 444, 601
MboII	GAAGA	2 cut(s)	439, 454
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	3 cut(s)	733, 766, 799
MlsI	TGGCCA	1 cut(s)	675
MluI	ACGCGT	1 cut(s)	914
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	7 cut(s)	221, 345, 568, 660, 841, 885, 890
Mox20I	TGGCCA	1 cut(s)	675
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	2 cut(s)	696, 713
Msp20I	TGGCCA	1 cut(s)	675
MspR9I	CCNGG	2 cut(s)	386, 677
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	386, 677
MvnI	CGCG	2 cut(s)	654, 916
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
NdeII	GATC	4 cut(s)	37, 51, 444, 601
NlaIII	CATG	7 cut(s)	67, 191, 368, 515, 587, 770, 829
NlaIV	GGNNCC	2 cut(s)	579, 860
NmuCI	GTSAC	2 cut(s)	166, 301
NspV	TTCGAA	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 51
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	342, 753
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	733
Psp6I	CCWGG	2 cut(s)	384, 675
PspGI	CCWGG	2 cut(s)	384, 675
PspN4I	GGNNCC	2 cut(s)	579, 860
PspPI	GGNCC	4 cut(s)	274, 316, 590, 859
PstI	CTGCAG	1 cut(s)	857
PsuI	RGATCY	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	733
SaqAI	TTAA	2 cut(s)	696, 713
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	4 cut(s)	37, 51, 444, 601
Sau96I	GGNCC	4 cut(s)	274, 316, 590, 859
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	386, 677
SduI	GDGCHC	3 cut(s)	733, 766, 799
SfcI	CTRYAG	1 cut(s)	853
SfuI	TTCGAA	1 cut(s)	220
SinI	GGWCC	1 cut(s)	274
SsiI	CCGC	1 cut(s)	654
SspI	AATATT	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	384, 675
TaaI	ACNGT	4 cut(s)	195, 278, 301, 566
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	4 cut(s)	20, 54, 220, 846
TaqII	GACCGA	1 cut(s)	642
TfiI	GAWTC	2 cut(s)	342, 753
Tru1I	TTAA	2 cut(s)	696, 713
Tru9I	TTAA	2 cut(s)	696, 713
TscAI	CASTG	2 cut(s)	171, 480
TseFI	GTSAC	2 cut(s)	166, 301
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	166, 301
TspDTI	ATGAA	6 cut(s)	176, 381, 420, 600, 783, 859
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	171, 480
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	795
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	3 cut(s)	10, 123, 556
XmnI	GAANNNNTTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.