Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001519.1

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Forward (+)

12619 .. 18497

Gene Structure 5879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001519.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgggcgtgaattcggcatcctccgattccggcaacgatctcaacgagcagatcgagcagctcatgcagtgcaagccactctccgagcaacaggtgagagtgctatgcgagaaggcaaaggaaatcttaatggaagaaagcaatgtccagcctgtgaaaagcccagtgacaatttgtggcgatattcatgggcagtttcacgaccttgcggagctctttcgaattggagggaagtgtcccgataccaattacttatttatgggagattatgtggaccgtggctattattcggttgaaactgtaacgcttctagtggccctgaaagtgcgttatcatcagcgcatcactattcttagaggaaaccatgaaagtcgtcagattactcaggtttatgggttttatgatgaatgtcttcgcaagtatgggaacgccagtgtatggaagaccttcaccgacctttttgactactttccactgacagcattggttgagtcagagatattttgtctgcatggtggattatcaccttcaatcgaaaaccttgataacataaggaattttgatcgtgttcaagaggttccgcatgaaggccccatgtgtgatctgttatggtctgacccagatgaccgatgtggttggggtatttcacctcgcggtgcaggatatacctttggccaggatatatctgaacaattcaatcatacaaatagtttaaagttgattgcaagagctcatcaattggttatggatggattcaactgggcccatgaacaaaaggtggttaccatattcagtgcacctaattattgctatcgctgtgggaacatggcgtctgttttagaagttgatgactgcaggggccatactttcatccagtttgagcctgctcctaggagaggggaaccggatgtcactcgtagaacacctgattactttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

313

Amino Acids

35.71

Weight (kDa)

5.14

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	1 cut(s)	654
AciI	CCGC	3 cut(s)	209, 581, 654
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	10, 556
AcyI	GRCGYC	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	438, 587, 896
AgsI	TTSAA	5 cut(s)	296, 531, 572, 697, 757
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	3 cut(s)	61, 214, 731
AluI	AGCT	3 cut(s)	61, 214, 731
Alw21I	GWGCWC	3 cut(s)	216, 733, 799
Alw44I	GTGCAC	1 cut(s)	795
AoxI	GGCC	5 cut(s)	315, 589, 673, 762, 859
ApaI	GGGCCC	1 cut(s)	766
ApaLI	GTGCAC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	10, 556
Asp700I	GAANNNNTTC	2 cut(s)	411, 446
AspA2I	CCTAGG	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	6 cut(s)	274, 316, 590, 762, 763, 859
AsuHPI	GGTGA	4 cut(s)	106, 442, 516, 639
AsuII	TTCGAA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	274
AvrII	CCTAGG	1 cut(s)	890
BaeGI	GKGCMC	2 cut(s)	766, 799
BalI	TGGCCA	1 cut(s)	675
BanII	GRGCYC	3 cut(s)	216, 733, 766
BbsI	GAAGAC	2 cut(s)	404, 449
Bbv12I	GWGCWC	3 cut(s)	216, 733, 799
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	743
BciT130I	CCWGG	1 cut(s)	677
BfaI	CTAG	2 cut(s)	311, 891
BfmI	CTRYAG	1 cut(s)	853
BisI	GCNGC	1 cut(s)	59
BlnI	CCTAGG	1 cut(s)	890
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	6 cut(s)	274, 316, 590, 762, 763, 859
BmiI	GGNNCC	5 cut(s)	579, 592, 764, 860, 903
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	2 cut(s)	158, 769
BmsI	GCATC	2 cut(s)	26, 351
BmuI	ACTGGG	2 cut(s)	158, 769
BpiI	GAAGAC	2 cut(s)	404, 449
Bpu14I	TTCGAA	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	277, 890
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 587, 896
Bse1I	ACTGG	4 cut(s)	164, 432, 764, 874
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	2 cut(s)	277, 890
BseGI	GGATG	4 cut(s)	17, 754, 870, 913
BseLI	CCNNNNNNNGG	3 cut(s)	438, 587, 896
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	4 cut(s)	164, 432, 764, 874
BseSI	GKGCMC	2 cut(s)	766, 799
BseXI	GCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	5 cut(s)	317, 591, 675, 764, 861
BsiHKAI	GWGCWC	3 cut(s)	216, 733, 799
BsiSI	CCGG	2 cut(s)	30, 905
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	438, 587, 896
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	5 cut(s)	317, 591, 675, 764, 861
Bsp119I	TTCGAA	1 cut(s)	220
Bsp120I	GGGCCC	1 cut(s)	762
Bsp1286I	GDGCHC	4 cut(s)	216, 733, 766, 799
Bsp143I	GATC	4 cut(s)	37, 51, 562, 601
BspACI	CCGC	3 cut(s)	209, 581, 654
BspANI	GGCC	5 cut(s)	317, 591, 675, 764, 861
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	5 cut(s)	579, 592, 764, 860, 903
BspMAI	CTGCAG	1 cut(s)	857
BspT104I	TTCGAA	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	4 cut(s)	164, 432, 764, 874
BssECI	CCNNGG	2 cut(s)	277, 890
BssMI	GATC	4 cut(s)	37, 51, 562, 601
BssNI	GRCGYC	1 cut(s)	830
BssT1I	CCWWGG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	2 cut(s)	278, 301
BstACI	GRCGYC	1 cut(s)	830
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	74, 885
BstDEI	CTNAG	2 cut(s)	353, 384
BstDSI	CCRYGG	1 cut(s)	277
BstEII	GGTNACC	1 cut(s)	781
BstENI	CCTNNNNNAGG	1 cut(s)	894
BstF5I	GGATG	4 cut(s)	17, 754, 870, 913
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	4 cut(s)	40, 54, 565, 604
BstMBI	GATC	4 cut(s)	37, 51, 562, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
BstNI	CCWGG	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	781
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	853
BstSLI	GKGCMC	2 cut(s)	766, 799
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	2 cut(s)	404, 449
BsuRI	GGCC	5 cut(s)	317, 591, 675, 764, 861
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	4 cut(s)	17, 754, 870, 913
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	5 cut(s)	74, 171, 439, 473, 799
Cac8I	GCNNGC	2 cut(s)	74, 885
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	6 cut(s)	274, 316, 590, 762, 763, 859
CseI	GACGC	1 cut(s)	819
CviAII	CATG	8 cut(s)	64, 188, 365, 512, 584, 595, 767, 826
DdeI	CTNAG	2 cut(s)	353, 384
DpnI	GATC	4 cut(s)	39, 53, 564, 603
DpnII	GATC	4 cut(s)	37, 51, 562, 601
DraI	TTTAAA	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	673
Ecl136II	GAGCTC	2 cut(s)	214, 731
Eco130I	CCWWGG	1 cut(s)	890
Eco24I	GRGCYC	3 cut(s)	216, 733, 766
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	2 cut(s)	214, 731
Eco91I	GGTNACC	1 cut(s)	781
EcoICRI	GAGCTC	2 cut(s)	214, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	894
EcoO109I	RGGNCCY	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	890
EcoT38I	GRGCYC	3 cut(s)	216, 733, 766
ErhI	CCWWGG	1 cut(s)	890
FaeI	CATG	8 cut(s)	67, 191, 368, 515, 587, 598, 770, 829
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	8 cut(s)	63, 187, 364, 511, 583, 594, 766, 825
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	4 cut(s)	4, 761, 857, 920
FriOI	GRGCYC	3 cut(s)	216, 733, 766
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	311, 891
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	5 cut(s)	317, 591, 675, 764, 861
HapII	CCGG	2 cut(s)	30, 905
HgaI	GACGC	1 cut(s)	819
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	830
Hin1II	CATG	8 cut(s)	67, 191, 368, 515, 587, 598, 770, 829
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	3 cut(s)	26, 491, 753
HpaII	CCGG	2 cut(s)	30, 905
HphI	GGTGA	4 cut(s)	106, 442, 516, 639
Hpy166II	GTNNAC	2 cut(s)	274, 797
Hpy188I	TCNGA	6 cut(s)	25, 85, 378, 496, 616, 688
Hpy188III	TCNNGA	3 cut(s)	200, 239, 572
Hpy8I	GTNNAC	2 cut(s)	274, 797
HpyAV	CCTTC	4 cut(s)	106, 457, 537, 581
HpyCH4III	ACNGT	2 cut(s)	278, 301
HpyCH4V	TGCA	7 cut(s)	67, 72, 511, 659, 725, 797, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
HpyF3I	CTNAG	2 cut(s)	353, 384
Hsp92I	GRCGYC	1 cut(s)	830
Hsp92II	CATG	8 cut(s)	67, 191, 368, 515, 587, 598, 770, 829
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	37, 51, 562, 601
LmnI	GCTCC	2 cut(s)	211, 892
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	26, 351
MaeI	CTAG	2 cut(s)	311, 891
MaeIII	GTNAC	4 cut(s)	166, 301, 781, 910
MalI	GATC	4 cut(s)	39, 53, 564, 603
MboI	GATC	4 cut(s)	37, 51, 562, 601
MboII	GAAGA	3 cut(s)	146, 404, 454
MfeI	CAATTG	1 cut(s)	737
MhlI	GDGCHC	4 cut(s)	216, 733, 766, 799
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	8 cut(s)	10, 171, 222, 247, 556, 692, 737, 802
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	6 cut(s)	31, 221, 350, 568, 660, 890
Mox20I	TGGCCA	1 cut(s)	675
MroXI	GAANNNNTTC	2 cut(s)	411, 446
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	2 cut(s)	128, 713
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	2 cut(s)	30, 905
MspR9I	CCNGG	1 cut(s)	677
MunI	CAATTG	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
NdeII	GATC	4 cut(s)	37, 51, 562, 601
NlaIII	CATG	8 cut(s)	67, 191, 368, 515, 587, 598, 770, 829
NlaIV	GGNNCC	5 cut(s)	579, 592, 764, 860, 903
NmuCI	GTSAC	2 cut(s)	166, 910
NspV	TTCGAA	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 51
PdmI	GAANNNNTTC	2 cut(s)	411, 446
PfeI	GAWTC	2 cut(s)	26, 753
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	2 cut(s)	216, 733
Psp6I	CCWGG	1 cut(s)	675
PspEI	GGTNACC	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	5 cut(s)	579, 592, 764, 860, 903
PspOMI	GGGCCC	1 cut(s)	762
PspPI	GGNCC	6 cut(s)	274, 316, 590, 762, 763, 859
PstI	CTGCAG	1 cut(s)	857
SacI	GAGCTC	2 cut(s)	216, 733
SaqAI	TTAA	2 cut(s)	128, 713
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	37, 51, 562, 601
Sau96I	GGNCC	6 cut(s)	274, 316, 590, 762, 763, 859
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	4 cut(s)	216, 733, 766, 799
SfaNI	GCATC	2 cut(s)	26, 351
SfcI	CTRYAG	1 cut(s)	853
SfuI	TTCGAA	1 cut(s)	220
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	8 cut(s)	10, 171, 222, 247, 556, 692, 737, 802
SsiI	CCGC	3 cut(s)	209, 581, 654
SspMI	CTAG	2 cut(s)	311, 891
SstI	GAGCTC	2 cut(s)	216, 733
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	2 cut(s)	278, 301
TaqI	TCGA	3 cut(s)	54, 220, 534
TaqII	GACCGA	1 cut(s)	642
TasI	AATT	8 cut(s)	10, 171, 222, 247, 556, 692, 737, 802
TfiI	GAWTC	2 cut(s)	26, 753
Tru1I	TTAA	2 cut(s)	128, 713
Tru9I	TTAA	2 cut(s)	128, 713
TscAI	CASTG	5 cut(s)	74, 171, 439, 480, 799
TseFI	GTSAC	2 cut(s)	166, 910
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	2 cut(s)	166, 910
TspDTI	ATGAA	6 cut(s)	176, 381, 420, 600, 783, 859
TspRI	CASTG	5 cut(s)	74, 171, 439, 480, 799
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	795
VpaK11BI	GGWCC	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	894
XapI	RAATTY	2 cut(s)	10, 556
XmaJI	CCTAGG	1 cut(s)	890
XmnI	GAANNNNTTC	2 cut(s)	411, 446
XspI	CTAG	2 cut(s)	311, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.