Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

21635162 .. 21639136

Gene Structure 3975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGCGCGAATTCGCTTCCAACGGATGCAACCCTCGATCTAGATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATTATGTGAGAAAGCTAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTTAAAAGCCCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATTGGGGGAAAGTGTCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATATTATTCTGTGGAAACTGTTACGCTGTTGGTTGGCTTGAAAGTACGGTATCCACAGCGAATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGACTATTTCCCACTGACAGCCTTGGTGGAGTCGGAAATATTCTGCCTTCACGGTGGATTATCACCATCCATCGAGACCCTTGACAACATTAGGAACTTTGATCGGGTTCAAGAAGTTCCACATGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGCTGGGGAATCTCTCCTCGTGGTGCTGGATATACATTTGGTCAGGATATTTCGGAACAATTCAATCACACTAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTCGTTATGGATGGATTCAATTGGGCACACGAGCAAAAAGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAACATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACCAGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048863 GO:0048869 GO:0070013 GO:0071704 GO:0071944 GO:0080022 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

313

Amino Acids

35.77

Weight (kDa)

5.05

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	55 - 248	2.8e-46	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	177
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	226, 587, 896
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	5 cut(s)	322, 572, 697, 757, 881
AluBI	AGCT	5 cut(s)	61, 116, 214, 718, 739
AluI	AGCT	5 cut(s)	61, 116, 214, 718, 739
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	2 cut(s)	258, 530
Alw44I	GTGCAC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	2 cut(s)	590, 828
ApaLI	GTGCAC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	8, 733
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	191, 516
AvaI	CYCGRG	1 cut(s)	726
BaeGI	GKGCMC	2 cut(s)	766, 799
BauI	CACGAG	2 cut(s)	651, 767
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	3 cut(s)	535, 539, 743
BciVI	GTATCC	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	258, 530
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	853
BfuI	GTATCC	1 cut(s)	342
BglII	AGATCT	2 cut(s)	51, 123
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	860
BmsI	GCATC	2 cut(s)	16, 742
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	860
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	277, 483, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 587, 896
Bse3DI	GCAATG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	277, 483, 890
BseGI	GGATG	4 cut(s)	31, 139, 527, 754
BseLI	CCNNNNNNNGG	3 cut(s)	226, 587, 896
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	3 cut(s)	639, 907, 912
BseSI	GKGCMC	2 cut(s)	766, 799
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	592, 830
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	1 cut(s)	726
BslI	CCNNNNNNNGG	3 cut(s)	226, 587, 896
BsmAI	GTCTC	2 cut(s)	258, 530
BsnI	GGCC	2 cut(s)	592, 830
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	2 cut(s)	766, 799
Bsp143I	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	592, 830
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	860
BspMAI	CTGCAG	1 cut(s)	857
BspPI	GGATC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	277, 483, 890
BssMI	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
BssSI	CACGAG	2 cut(s)	651, 767
BssT1I	CCWWGG	1 cut(s)	483
Bst2BI	CACGAG	2 cut(s)	651, 767
Bst4CI	ACNGT	5 cut(s)	195, 278, 301, 330, 515
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	117, 353, 384
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	4 cut(s)	31, 139, 527, 754
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	8, 733
BstKTI	GATC	7 cut(s)	40, 54, 126, 205, 565, 619, 723
BstMAI	GTCTC	2 cut(s)	258, 530
BstMBI	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
BstSFI	CTRYAG	1 cut(s)	853
BstSLI	GKGCMC	2 cut(s)	766, 799
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	51, 123
BstYI	RGATCY	2 cut(s)	51, 123
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	592, 830
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	4 cut(s)	31, 139, 527, 754
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	74, 473, 799
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	2 cut(s)	8, 733
Cfr13I	GGNCC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	6 cut(s)	64, 188, 200, 365, 584, 826
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	3 cut(s)	117, 353, 384
DpnI	GATC	7 cut(s)	39, 53, 125, 204, 564, 618, 722
DpnII	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	6 cut(s)	67, 191, 203, 368, 587, 829
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	6 cut(s)	63, 187, 199, 364, 583, 825
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	4 cut(s)	38, 146, 514, 761
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	2 cut(s)	7, 732
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	592, 830
HhaI	GCGC	2 cut(s)	8, 733
Hin1II	CATG	6 cut(s)	67, 191, 203, 368, 587, 829
Hin6I	GCGC	2 cut(s)	6, 731
HinP1I	GCGC	2 cut(s)	6, 731
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	4 cut(s)	342, 491, 642, 753
HphI	GGTGA	2 cut(s)	191, 516
Hpy166II	GTNNAC	2 cut(s)	274, 797
Hpy188I	TCNGA	6 cut(s)	85, 98, 378, 496, 616, 688
Hpy188III	TCNNGA	7 cut(s)	41, 239, 535, 572, 620, 677, 839
Hpy8I	GTNNAC	2 cut(s)	274, 797
HpyAV	CCTTC	3 cut(s)	518, 581, 912
HpyCH4III	ACNGT	5 cut(s)	195, 278, 301, 330, 515
HpyCH4IV	ACGT	2 cut(s)	144, 866
HpyCH4V	TGCA	7 cut(s)	29, 67, 72, 209, 431, 797, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
HpyF3I	CTNAG	3 cut(s)	117, 353, 384
HpySE526I	ACGT	2 cut(s)	144, 866
Hsp92II	CATG	6 cut(s)	67, 191, 203, 368, 587, 829
HspAI	GCGC	2 cut(s)	6, 731
Kzo9I	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	16, 742
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	144, 866
MaeIII	GTNAC	5 cut(s)	166, 301, 599, 781, 910
MalI	GATC	7 cut(s)	39, 53, 125, 204, 564, 618, 722
MboI	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
MboII	GAAGA	1 cut(s)	454
MfeI	CAATTG	1 cut(s)	757
MflI	RGATCY	2 cut(s)	51, 123
MhlI	GDGCHC	2 cut(s)	766, 799
MluCI	AATT	4 cut(s)	10, 692, 757, 834
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	2 cut(s)	44, 474
MnlI	CCTC	9 cut(s)	44, 87, 350, 467, 660, 835, 841, 885, 890
MseI	TTAA	3 cut(s)	128, 156, 713
MunI	CAATTG	1 cut(s)	757
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 73
NdeII	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
NlaIII	CATG	6 cut(s)	67, 191, 203, 368, 587, 829
NlaIV	GGNNCC	1 cut(s)	860
NmuCI	GTSAC	2 cut(s)	166, 599
PfeI	GAWTC	3 cut(s)	342, 642, 753
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp1406I	AACGTT	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	860
PspPI	GGNCC	1 cut(s)	590
PstI	CTGCAG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	51, 123
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	128, 156, 713
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	7 cut(s)	37, 51, 123, 202, 562, 616, 720
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	766, 799
SfaNI	GCATC	2 cut(s)	16, 742
SfcI	CTRYAG	1 cut(s)	853
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	4 cut(s)	10, 692, 757, 834
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	5 cut(s)	195, 278, 301, 330, 515
TaiI	ACGT	2 cut(s)	147, 869
TaqI	TCGA	4 cut(s)	36, 273, 534, 846
TasI	AATT	4 cut(s)	10, 692, 757, 834
TfiI	GAWTC	3 cut(s)	342, 642, 753
Tru1I	TTAA	3 cut(s)	128, 156, 713
Tru9I	TTAA	3 cut(s)	128, 156, 713
TscAI	CASTG	3 cut(s)	74, 480, 799
TseFI	GTSAC	2 cut(s)	166, 599
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	2 cut(s)	166, 599
TspDTI	ATGAA	6 cut(s)	150, 176, 381, 420, 600, 859
TspGWI	ACGGA	2 cut(s)	38, 209
TspRI	CASTG	3 cut(s)	74, 480, 799
Tth111I	GACNNNGTC	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	795
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.