Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

491188 .. 495744

Gene Structure 4557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00660.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATTCGGTCCCTTCGAACTCCCATGGGAATCTGGATGAGCAGATTGCTCAACTCATGCAGTGCAAGCCCTTGTCCGAGCAAGAGGTAAGGGTGCTCTGTGAGAAGGCCAAGGAAATATTAATGGAAGAAAGCAATGTCCAGCCTGTAAAAAGCCCTGTAACTATCTGTGGTGATATTCATGGACAATTCCATGATCTAGCGGAGCTTTTCCGCATTGGAGGAAAGTGCCCAGATACAAACTATTTATTTATGGGAGATTATGTGGACCGTGGCTATTATTCAGTTGAAACAGTGACCCTCCTTGTGGCCTTGAAGGTGCGTTATCATCAGCGTATTACTATCCTAAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTTTATGGTTTTTATGACGAGTGCCTACGGAAGTATGGTAATGCCAATGTTTGGAAGATCTTTACAGATTTATTTGACTATTTCCCGCTCACAGCATTGGTTGAATCTGAAATATTCTGCCTGCATGGAGGGCTGTCTCCATCCATTGAAACCCTCGATAACATACGTAATTTGACCGTGTACAAGAGGTTCCTCATGAGGGTCCCATGTGTGATCTTTTATGGTCTGATCATGATCGATCGCTGTGGTTGGGGTATCTCTCCGAGGGGTGCTGGATATACATTTGGCCAGGACATATCCGAGCAGTTTAATCATACAAATAACTTAAAGTTGATTGCTAGAGCACATCAGCTGGTCATGGAAGGATACAACTGGGGTCATGAACAAAAAGTGGTCACTATATTTAGTGCACCCAATTATTGTTATCGCTGTGGAAATATGGCATCCATCCTGGAAGTCGATGACTGCAAAGGTCACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAACCGGATGTGACCCGAAGAACACCTGATTACTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

312

Amino Acids

35.71

Weight (kDa)

5.94

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	469
AciI	CCGC	3 cut(s)	203, 214, 467
AcoI	YGGCCR	1 cut(s)	667
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	4 cut(s)	307, 432, 580, 890
AgsI	TTSAA	4 cut(s)	290, 316, 485, 530
AjnI	CCWGG	2 cut(s)	669, 831
AluBI	AGCT	3 cut(s)	208, 733, 881
AluI	AGCT	3 cut(s)	208, 733, 881
Alw21I	GWGCWC	3 cut(s)	99, 727, 793
Alw26I	GTCTC	1 cut(s)	522
Alw44I	GTGCAC	1 cut(s)	789
AoxI	GGCC	3 cut(s)	108, 309, 667
ApaLI	GTGCAC	1 cut(s)	789
AseI	ATTAAT	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	10, 268, 583
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	10, 268, 583
BaeGI	GKGCMC	2 cut(s)	233, 793
BalI	TGGCCA	1 cut(s)	669
Bbv12I	GWGCWC	3 cut(s)	99, 727, 793
BccI	CCATC	2 cut(s)	529, 836
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	671, 833
BciVI	GTATCC	1 cut(s)	740
BclI	TGATCA	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	2 cut(s)	200, 720
BfuI	GTATCC	1 cut(s)	740
BglII	AGATCT	1 cut(s)	438
Bme1390I	CCNGG	2 cut(s)	671, 833
Bme18I	GGWCC	3 cut(s)	10, 268, 583
BmgT120I	GGNCC	3 cut(s)	10, 268, 583
BmiI	GGNNCC	4 cut(s)	12, 572, 584, 585
BmrFI	CCNGG	2 cut(s)	671, 833
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	763
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	614
BsaJI	CCNNGG	5 cut(s)	25, 111, 271, 644, 884
BsaWI	WCCGGW	1 cut(s)	898
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 432, 580, 890
Bse1I	ACTGG	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	671, 833
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	5 cut(s)	25, 111, 271, 644, 884
BseGI	GGATG	5 cut(s)	43, 521, 824, 828, 907
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	4 cut(s)	307, 432, 580, 890
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	758
BseSI	GKGCMC	2 cut(s)	233, 793
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	3 cut(s)	110, 311, 669
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	3 cut(s)	99, 727, 793
BsiSI	CCGG	1 cut(s)	899
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	4 cut(s)	307, 432, 580, 890
BsmAI	GTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	3 cut(s)	110, 311, 669
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	4 cut(s)	99, 233, 727, 793
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	3 cut(s)	203, 214, 467
BspANI	GGCC	3 cut(s)	110, 311, 669
BspDI	ATCGAT	1 cut(s)	618
BspHI	TCATGA	3 cut(s)	576, 612, 760
BspLI	GGNNCC	4 cut(s)	12, 572, 584, 585
BspT104I	TTCGAA	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	758
BssECI	CCNNGG	5 cut(s)	25, 111, 271, 644, 884
BssMI	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
BssT1I	CCWWGG	3 cut(s)	25, 111, 884
Bst2UI	CCWGG	2 cut(s)	671, 833
Bst4CI	ACNGT	3 cut(s)	272, 295, 559
BstAUI	TGTACA	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	68, 503, 879
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	2 cut(s)	25, 271
BstF5I	GGATG	5 cut(s)	43, 521, 824, 828, 907
BstKTI	GATC	6 cut(s)	199, 441, 597, 612, 618, 622
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 511
BstNI	CCWGG	2 cut(s)	671, 833
BstSCI	CCNGG	2 cut(s)	669, 831
BstSLI	GKGCMC	2 cut(s)	233, 793
BstSNI	TACGTA	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	110, 311, 669
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	2 cut(s)	25, 271
BtsCI	GGATG	5 cut(s)	43, 521, 824, 828, 907
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 300
Cac8I	GCNNGC	3 cut(s)	68, 503, 879
CciI	TCATGA	3 cut(s)	576, 612, 760
Cfr13I	GGNCC	3 cut(s)	10, 268, 583
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	562
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	6 cut(s)	198, 440, 596, 611, 617, 621
DpnII	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
EaeI	YGGCCR	1 cut(s)	667
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	3 cut(s)	25, 111, 884
Eco47I	GGWCC	3 cut(s)	10, 268, 583
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	669, 831
EcoT14I	CCWWGG	3 cut(s)	25, 111, 884
ErhI	CCWWGG	3 cut(s)	25, 111, 884
FaqI	GGGAC	1 cut(s)	569
FauI	CCCGC	1 cut(s)	474
FbaI	TGATCA	1 cut(s)	609
FokI	GGATG	5 cut(s)	50, 508, 811, 815, 914
FspBI	CTAG	2 cut(s)	200, 720
HaeIII	GGCC	3 cut(s)	110, 311, 669
HapII	CCGG	1 cut(s)	899
HinfI	GANTC	3 cut(s)	5, 31, 485
HpaII	CCGG	1 cut(s)	899
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	268, 562, 791
Hpy188I	TCNGA	6 cut(s)	79, 372, 490, 609, 645, 682
Hpy188III	TCNNGA	4 cut(s)	35, 577, 613, 761
Hpy8I	GTNNAC	3 cut(s)	268, 562, 791
HpyAV	CCTTC	4 cut(s)	24, 100, 310, 737
HpyCH4III	ACNGT	3 cut(s)	272, 295, 559
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	61, 66, 505, 791, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 511
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	547
KflI	GGGWCCC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
LmnI	GCTCC	2 cut(s)	205, 886
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	2 cut(s)	200, 720
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	5 cut(s)	160, 295, 775, 854, 904
MalI	GATC	6 cut(s)	198, 440, 596, 611, 617, 621
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
MboII	GAAGA	3 cut(s)	140, 448, 924
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	4 cut(s)	99, 233, 727, 793
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	3 cut(s)	188, 550, 796
MluNI	TGGCCA	1 cut(s)	669
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	3 cut(s)	122, 690, 707
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	1 cut(s)	899
MspR9I	CCNGG	2 cut(s)	671, 833
MvaI	CCWGG	2 cut(s)	671, 833
MwoI	GCNNNNNNNGC	2 cut(s)	67, 511
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
NlaIV	GGNNCC	4 cut(s)	12, 572, 584, 585
NmuCI	GTSAC	4 cut(s)	295, 775, 854, 904
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	3 cut(s)	576, 612, 760
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	5, 31, 485
PflMI	CCANNNNNTGG	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	831
Ple19I	CGATCG	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	548
PpuMI	RGGWCCY	1 cut(s)	583
PshBI	ATTAAT	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	2 cut(s)	669, 831
PspGI	CCWGG	2 cut(s)	669, 831
PspN4I	GGNNCC	4 cut(s)	12, 572, 584, 585
PspPI	GGNCC	3 cut(s)	10, 268, 583
PspPPI	RGGWCCY	1 cut(s)	583
PsrI	GAACNNNNNNTAC	2 cut(s)	554, 586
PsuI	RGATCY	1 cut(s)	438
PvuI	CGATCG	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	122, 690, 707
Sau3AI	GATC	6 cut(s)	196, 438, 594, 609, 615, 619
Sau96I	GGNCC	3 cut(s)	10, 268, 583
ScrFI	CCNGG	2 cut(s)	671, 833
SduI	GDGCHC	4 cut(s)	99, 233, 727, 793
SetI	ASST	9 cut(s)	90, 210, 321, 550, 572, 735, 856, 883, 922
SfaNI	GCATC	1 cut(s)	833
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	3 cut(s)	10, 268, 583
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	548
Sse9I	AATT	3 cut(s)	188, 550, 796
SsiI	CCGC	3 cut(s)	203, 214, 467
SspI	AATATT	2 cut(s)	120, 495
SspMI	CTAG	2 cut(s)	200, 720
StyD4I	CCNGG	2 cut(s)	669, 831
StyI	CCWWGG	3 cut(s)	25, 111, 884
TaaI	ACNGT	3 cut(s)	272, 295, 559
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	4 cut(s)	17, 537, 618, 840
TasI	AATT	3 cut(s)	188, 550, 796
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	3 cut(s)	5, 31, 485
Tru1I	TTAA	3 cut(s)	122, 690, 707
Tru9I	TTAA	3 cut(s)	122, 690, 707
TscAI	CASTG	2 cut(s)	68, 300
TseFI	GTSAC	4 cut(s)	295, 775, 854, 904
Tsp45I	GTSAC	4 cut(s)	295, 775, 854, 904
TspDTI	ATGAA	4 cut(s)	170, 375, 777, 853
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	68, 300
Van91I	CCANNNNNTGG	1 cut(s)	432
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	3 cut(s)	10, 268, 583
VspI	ATTAAT	1 cut(s)	122
XspI	CTAG	2 cut(s)	200, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.