Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002422

Physical Location & Seq

Genomic Coordinates Reverse (-)

4474706 .. 4480068

Gene Structure 5363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAATGCAAGCCACTCTCAGAGCAACAGGTGAGAATGTTATGCGAGAAAGCAAAGGAAATTCTAATGGGAGAAAGCAATGTTCAGCCTGTGAAAAGCCCAGTGACAATTTGTGGCGATATTCATGGGCAGTTTCACGACCTTGCAGAGCTTTTTCGAATTGGAGGGAAGTGTCCTGATACCAATTACTTGTTTATGGGAGATTATGTGGACCGTGGCTATTACTCTGTTGAAACCGTGACGCTCTTAGTGGCTCTGAAAGTGCGTTATCCTCAGCGAATCACTATTCTCAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTCCGAAAATATGGAAATGCCAATGTTTGGAAGATCTTCACTGACCTTTTTGACTACTTTCCACTGACAGCATTGGTTGAGTCAGAAATATTTTGCCTGCATGGTGGATTGTCCCCTTCAATTGAAAACCTTGATAACATAAGGAATTTTGACCGTGTTCAAGAGGTTCCGCATGAAGGGCCGATGTGCGATCTGTTATGGTCTGACCCAGATGACCGATGTGGTTGGGGTATTTCACCTCGTGGTGCAGGATATACTTTTGGCCAGATCCGAACAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048863 GO:0048869 GO:0071704 GO:0071944 GO:0080022 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

210

Amino Acids

23.91

Weight (kDa)

5.38

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42500 AT2G42500 AT3G58500
fragaria_vesca	FvH4_3g45210 FvH4_3g45210 FvH4_6g21560 FvH4_6g21560 FvH4_6g21560
malus_domestica	MD03G1007300.v1.1 MD11G1010600.v1.1 MD12G1052900.v1.1 MD14G1051300.v1.1
prunus_persica	Prupe.6G006900_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1 Prupe.7G084700_v2.0.a1
pyrus_communis	pycom11g00660 pycom12g04620 pycom14g04250
rosa_chinensis	RchiOBHm_Chr3g0478801 RchiOBHm_Chr5g0082821
rosa_laevigata	RLG00000023624 RLG00000036992
rosa_multiflora	Rmu_co8495735.1_g000001 Rmu_sc0001381.1_g000017 Rmu_sc0001519.1_g000003 Rmu_sc0011683.1_g000007
rosa_roxburghii	Rroxscaffold_6G00403060
rosa_rugosa	Rorug03G0168300 Rorug05G0480100
rosa_samantha	Rh3AG220100 Rh3BG251900 Rh3CG248800 Rh3DG245000 Rh5AG530400 Rh5BG557300 Rh5CG580300 Rh5DG565700
rosa_wichuraiana	Rw3G019780 Rw5G049820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	375
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	2 cut(s)	60, 493
AdeI	CACNNNGTG	1 cut(s)	590
AfiI	CCNNNNNNNGG	2 cut(s)	375, 524
AgsI	TTSAA	4 cut(s)	233, 468, 473, 509
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	2 cut(s)	527, 610
ApoI	RAATTY	2 cut(s)	60, 493
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	211, 527
AsuHPI	GGTGA	2 cut(s)	43, 576
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	612
BauI	CACGAG	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 527
BmiI	GGNNCC	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 524
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	2 cut(s)	11, 85
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	375, 524
BseMI	GCAATG	2 cut(s)	11, 85
BseMII	CTCAG	4 cut(s)	33, 287, 304, 335
BseNI	ACTGG	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	529, 612
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	375, 524
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	529, 612
Bsp119I	TTCGAA	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	381, 538, 615
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	529, 612
BspCNI	CTCAG	4 cut(s)	32, 286, 303, 334
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	610
BspT104I	TTCGAA	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	11, 85
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	381, 538, 615
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	215, 238, 503
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	11, 446
BstDEI	CTNAG	5 cut(s)	19, 247, 273, 290, 321
BstDSI	CCRYGG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	384, 541, 618
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	381, 538, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 526
BstX2I	RGATCY	2 cut(s)	381, 615
BstYI	RGATCY	2 cut(s)	381, 615
BsuRI	GGCC	2 cut(s)	529, 612
BtgI	CCRYGG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	108, 387, 410
Cac8I	GCNNGC	2 cut(s)	11, 446
Cfr13I	GGNCC	2 cut(s)	211, 527
CseI	GACGC	1 cut(s)	250
CviAII	CATG	4 cut(s)	125, 302, 449, 521
CviJI	RGCY	8 cut(s)	13, 88, 99, 151, 219, 254, 529, 612
CviKI_1	RGCY	8 cut(s)	13, 88, 99, 151, 219, 254, 529, 612
DdeI	CTNAG	5 cut(s)	19, 247, 273, 290, 321
DpnI	GATC	3 cut(s)	383, 540, 617
DpnII	GATC	3 cut(s)	381, 538, 615
DraIII	CACNNNGTG	1 cut(s)	590
EaeI	YGGCCR	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	211
FaeI	CATG	4 cut(s)	128, 305, 452, 524
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	124, 301, 448, 520
HaeIII	GGCC	2 cut(s)	529, 612
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	4 cut(s)	128, 305, 452, 524
HinfI	GANTC	2 cut(s)	279, 428
HphI	GGTGA	2 cut(s)	43, 576
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	8 cut(s)	22, 258, 293, 315, 353, 433, 553, 620
Hpy188III	TCNNGA	3 cut(s)	137, 176, 509
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	474, 518
HpyCH4III	ACNGT	3 cut(s)	215, 238, 503
HpyCH4V	TGCA	5 cut(s)	4, 9, 146, 448, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 526
HpyF3I	CTNAG	5 cut(s)	19, 247, 273, 290, 321
Hsp92II	CATG	4 cut(s)	128, 305, 452, 524
Kzo9I	GATC	3 cut(s)	381, 538, 615
LpnPI	CCDG	9 cut(s)	14, 102, 114, 189, 308, 458, 570, 582, 626
MaeIII	GTNAC	2 cut(s)	103, 238
MalI	GATC	3 cut(s)	383, 540, 617
MboI	GATC	3 cut(s)	381, 538, 615
MboII	GAAGA	2 cut(s)	376, 391
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	2 cut(s)	381, 615
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	7 cut(s)	60, 108, 159, 184, 468, 493, 624
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	5 cut(s)	158, 282, 287, 505, 597
Mox20I	TGGCCA	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	1 cut(s)	628
Msp20I	TGGCCA	1 cut(s)	612
MunI	CAATTG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	10, 526
NdeII	GATC	3 cut(s)	381, 538, 615
NlaIII	CATG	4 cut(s)	128, 305, 452, 524
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	103, 238
NspV	TTCGAA	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	279
PflMI	CCANNNNNTGG	1 cut(s)	375
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	211, 527
PsuI	RGATCY	2 cut(s)	381, 615
SaqAI	TTAA	1 cut(s)	628
Sau3AI	GATC	3 cut(s)	381, 538, 615
Sau96I	GGNCC	2 cut(s)	211, 527
SchI	GAGTC	1 cut(s)	437
SetI	ASST	8 cut(s)	33, 144, 153, 327, 396, 480, 516, 589
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	7 cut(s)	60, 108, 159, 184, 468, 493, 624
SsiI	CCGC	1 cut(s)	518
SspI	AATATT	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	215, 238, 503
TaqI	TCGA	1 cut(s)	157
TaqII	GACCGA	1 cut(s)	579
TasI	AATT	7 cut(s)	60, 108, 159, 184, 468, 493, 624
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	3 cut(s)	108, 394, 417
TseFI	GTSAC	2 cut(s)	103, 238
Tsp45I	GTSAC	2 cut(s)	103, 238
TspDTI	ATGAA	4 cut(s)	113, 318, 357, 537
TspRI	CASTG	3 cut(s)	108, 394, 417
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	60, 493
XmnI	GAANNNNTTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.