pycom03g01310

Nucleolar complex protein 2 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
1004175 .. 1004714
540 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01310.1

Sequence Viewer

Length: 372 bp
ATGCTTTGTTGTCGGAATCCAGTGTTCTTGTGGGCGAGCATTCATCTGTCTTTGGAAGTAAAGGACGAGAAAGCGAGGAAGAAGATGACACCAGGGACGACGAAGGCATTGCTGCCTTTAGTTCGTCCTGGTTACCAGGAAAGGATTCCAACTGAACCACCCAAAGATGTGAAAAAGAAGAAAAGGAAGCGAAAGACTGAGTGCCAGGACCAAGTAGCCATGGATGAAGATATTGTTCAGGAGTTGGTACTCAGCTCTGACGAAGAAGACGGGTCTTTAGCGGACACCTCTTCAGCTGACGAAGATGGAGTGGAGAAACCAGCTCCTTCGAAGCAGGAAAGCAAGAAGCCGAAACGCTCTACTAGTAAATAA

Protein Analysis

124

Amino Acids

13.84

Weight (kDa)

8.73

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024335)

Species Orthologous Gene IDs
malus_domestica MD03G1015200.v1.1
pyrus_communis pycom03g01310 pycom03g01330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 249
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 4 cut(s) 91, 127, 135, 204
AluBI AGCT 3 cut(s) 255, 296, 323
AluI AGCT 3 cut(s) 255, 296, 323
ApeKI GCWGC 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 4 cut(s) 93, 129, 137, 206
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 4 cut(s) 93, 129, 137, 206
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmrFI CCNGG 4 cut(s) 93, 129, 137, 206
BpiI GAAGAC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 92, 219
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 4 cut(s) 93, 129, 137, 206
BseDI CCNNGG 2 cut(s) 92, 219
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 189, 265
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 190, 264
BspT104I TTCGAA 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 107
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 92, 219
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 4 cut(s) 93, 129, 137, 206
Bst6I CTCTTC 1 cut(s) 295
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 198, 251
BstDSI CCRYGG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 229
BstNI CCWGG 4 cut(s) 93, 129, 137, 206
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 91, 127, 135, 204
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 218, 255, 296, 323, 349
CviKI_1 RGCY 5 cut(s) 218, 255, 296, 323, 349
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 198, 251
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 4 cut(s) 91, 127, 135, 204
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 223
FaiI YATR 1 cut(s) 221
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 223
HinfI GANTC 2 cut(s) 16, 145
Hpy188I TCNGA 2 cut(s) 15, 259
Hpy188III TCNNGA 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 97, 336
HpyF3I CTNAG 2 cut(s) 198, 251
Hsp92II CATG 1 cut(s) 223
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 8 cut(s) 91, 94, 190, 239, 275, 278, 282, 314
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 2 cut(s) 69, 298
MroXI GAANNNNTTC 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 4 cut(s) 93, 129, 137, 206
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 4 cut(s) 93, 129, 137, 206
NcoI CCATGG 1 cut(s) 219
NlaIII CATG 1 cut(s) 223
NspV TTCGAA 1 cut(s) 329
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 16, 145
PkrI GCNGC 1 cut(s) 114
Psp6I CCWGG 4 cut(s) 91, 127, 135, 204
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 4 cut(s) 91, 127, 135, 204
PspPI GGNCC 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SatI GCNGC 1 cut(s) 113
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 4 cut(s) 93, 129, 137, 206
SetI ASST 4 cut(s) 257, 290, 298, 325
SfuI TTCGAA 1 cut(s) 329
SinI GGWCC 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 362
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 4 cut(s) 91, 127, 135, 204
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 1 cut(s) 329
TfiI GAWTC 2 cut(s) 16, 145
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 32, 240
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.