Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024335

Physical Location & Seq

Genomic Coordinates Forward (+)

1011687 .. 1014324

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01330.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGATTCTCCTGCATGAGAAGAGGGTTTTTCATACTTCTCTCATTTGCGCACAACAGTTGAATAGTGCCTCATGGCAGCTGGTTGTTGCGCTATGGATTTCACCGGTTGAACATTGCAGATCAGATGTAAATTATCGGATTATCAAATGGAGCTCTACTGGACTATCAAGTTTGAAAATTTTGGATGGAAATGGACGTTCAAAACCTCCTGGACTCTCAACTCTATTAAGAGAGCACAGCTTATTGGCACTGCATGCTAGAATGCCAGTAGTACTAGACTCGGTGGCTGGCTGCTGCGCCTACAGATTTCAGTTTGTGAAAGCATTCCGAAAGGTTTATGAGTGGAAGTTCATGAACTGTCTTGAGCTCTGGACTGGAGCTGTCTCTTCCTATGGCACAGGACCTGAGTTTAGGGCTGTTGCGTATCCCCTAGCTCAAATAATTAACGGGAACAGTGCTGCTTTGACAGGTACTTTCATTCTGGTTTCTATGCTGCTTTTGGACATGCTCGAGATGAAAGAGTTGAACAGACCCACCACTGGTACTGAAGACGAGCTTGCTGAACATTTAGCTCACTGGAGCTATTCTGTCGCTTTCCCCGAGTTGTCTTTTATTCTAGCTGTACGAATTGCGTACCTTCTGCAAATCCAACAAGGTTTAGAGGTTTCGGAAATCAATGAGGGAGCTCATTTGTCAGCCCAGATCGAGGCTAATTGTCAGTTTACAAATGAAAGGCGTATGTCAATTTCTTTTCTCCCAAATGATCCTGCAGCTGCGTATTTCCTTGAGGATGAGAAAAAGTCAGGGGCATGCCCTCTGTCGAAGTACGTTGCAACTCTACATGAAGTAGCACAACAAAGAAATGCTTCGTTGTCGGAATCCAGGTTTGATTGGGCGAGCATTCATCTGTCTTTGGAAGTAAAGGATGAGAAAGCGACGAAGAAGATGACACCAAGGACGACGAAGGCATTGCTGCCTTTAGGTCGCCCTGGTTACCAGGAAAGGATTCCAACTGAACCACCCAAAGATGTGAAAAAGAAGAAAAGGAAGCGAAAGACTGAGTGCCAGGACCAAGTAGCCATGGATGAAGATATTGTTCAGGAGTTGGTATTCAGTTCTGATGAAGAAGACAGGTCTTTAGCGACACCTCTTCGGCTGATGAAGATGGAGTGGAGAAACCAGCTCCTTCGAAGCTGGAAAGCAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

404

Amino Acids

45.7

Weight (kDa)

8.51

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024335)

Species	Orthologous Gene IDs
malus_domestica	MD03G1015200.v1.1
pyrus_communis	pycom03g01310 pycom03g01330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	49
AclWI	GGATC	1 cut(s)	758
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	6 cut(s)	273, 472, 544, 624, 635, 827
AfiI	CCNNNNNNNGG	2 cut(s)	539, 706
AgeI	ACCGGT	1 cut(s)	103
AgsI	TTSAA	5 cut(s)	61, 110, 175, 201, 526
AjnI	CCWGG	5 cut(s)	208, 881, 988, 996, 1065
Alw21I	GWGCWC	4 cut(s)	155, 237, 369, 688
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	758
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	2 cut(s)	509, 599
ApeKI	GCWGC	8 cut(s)	76, 291, 294, 458, 493, 770, 773, 973
ApoI	RAATTY	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	103
Asp700I	GAANNNNTTC	3 cut(s)	323, 865, 1005
AspLEI	GCGC	3 cut(s)	50, 91, 299
AspS9I	GGNCC	2 cut(s)	401, 1069
AsuHPI	GGTGA	1 cut(s)	93
AsuII	TTCGAA	1 cut(s)	1189
AvaI	CYCGRG	2 cut(s)	509, 599
AvaII	GGWCC	2 cut(s)	401, 1069
BanII	GRGCYC	3 cut(s)	155, 369, 688
BbsI	GAAGAC	2 cut(s)	555, 1134
Bbv12I	GWGCWC	4 cut(s)	155, 237, 369, 688
BbvI	GCAGC	8 cut(s)	88, 278, 281, 445, 480, 760, 782, 960
BccI	CCATC	2 cut(s)	179, 1159
BcgI	CGANNNNNNTGC	2 cut(s)	952, 986
BciT130I	CCWGG	5 cut(s)	210, 883, 990, 998, 1067
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	4 cut(s)	258, 275, 431, 617
BfmI	CTRYAG	2 cut(s)	301, 768
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	8 cut(s)	77, 292, 295, 459, 494, 771, 774, 974
BlsI	GCNGC	8 cut(s)	78, 293, 296, 460, 495, 772, 775, 975
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	5 cut(s)	210, 883, 990, 998, 1067
Bme18I	GGWCC	2 cut(s)	401, 1069
BmeT110I	CYCGRG	2 cut(s)	509, 599
BmgT120I	GGNCC	2 cut(s)	401, 1069
BmrFI	CCNGG	5 cut(s)	210, 883, 990, 998, 1067
BpiI	GAAGAC	2 cut(s)	555, 1134
BpmI	CTGGAG	2 cut(s)	396, 598
Bpu14I	TTCGAA	1 cut(s)	1189
BpuEI	CTTGAG	2 cut(s)	383, 806
BsaJI	CCNNGG	3 cut(s)	953, 988, 1080
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 706
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	5 cut(s)	163, 266, 379, 544, 581
Bse3DI	GCAATG	2 cut(s)	112, 968
BseBI	CCWGG	5 cut(s)	210, 883, 990, 998, 1067
BseDI	CCNNGG	3 cut(s)	953, 988, 1080
BseGI	GGATG	4 cut(s)	190, 796, 931, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	539, 706
BseMI	GCAATG	2 cut(s)	112, 968
BseMII	CTCAG	2 cut(s)	396, 1050
BseNI	ACTGG	5 cut(s)	163, 266, 379, 544, 581
BseXI	GCAGC	8 cut(s)	88, 278, 281, 445, 480, 760, 782, 960
BshTI	ACCGGT	1 cut(s)	103
BsiHKAI	GWGCWC	4 cut(s)	155, 237, 369, 688
BsiHKCI	CYCGRG	2 cut(s)	509, 599
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	539, 706
BsmAI	GTCTC	1 cut(s)	388
BsmI	GAATGC	3 cut(s)	267, 323, 900
BsoBI	CYCGRG	2 cut(s)	509, 599
Bsp119I	TTCGAA	1 cut(s)	1189
Bsp1286I	GDGCHC	4 cut(s)	155, 237, 369, 688
Bsp143I	GATC	3 cut(s)	119, 702, 763
Bsp19I	CCATGG	1 cut(s)	1080
BspCNI	CTCAG	2 cut(s)	397, 1051
BspHI	TCATGA	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	1 cut(s)	758
BspT104I	TTCGAA	1 cut(s)	1189
BsrDI	GCAATG	2 cut(s)	112, 968
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	5 cut(s)	163, 266, 379, 544, 581
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	953, 988, 1080
BssMI	GATC	3 cut(s)	119, 702, 763
BssT1I	CCWWGG	2 cut(s)	953, 1080
Bst2UI	CCWGG	5 cut(s)	210, 883, 990, 998, 1067
Bst4CI	ACNGT	3 cut(s)	57, 359, 455
Bst6I	CTCTTC	3 cut(s)	14, 391, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	1189
BstC8I	GCNNGC	5 cut(s)	255, 289, 558, 811, 898
BstDEI	CTNAG	2 cut(s)	405, 1059
BstDSI	CCRYGG	1 cut(s)	1080
BstEII	GGTNACC	1 cut(s)	992
BstF5I	GGATG	4 cut(s)	190, 796, 931, 1090
BstHHI	GCGC	3 cut(s)	50, 91, 299
BstKTI	GATC	3 cut(s)	122, 705, 766
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	3 cut(s)	119, 702, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	5 cut(s)	210, 883, 990, 998, 1067
BstNSI	RCATGY	3 cut(s)	257, 508, 813
BstPI	GGTNACC	1 cut(s)	992
BstSCI	CCNGG	5 cut(s)	208, 881, 988, 996, 1065
BstSFI	CTRYAG	2 cut(s)	301, 768
BstV1I	GCAGC	8 cut(s)	88, 278, 281, 445, 480, 760, 782, 960
BstV2I	GAAGAC	2 cut(s)	555, 1134
BsuI	GTATCC	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	1080
BtsCI	GGATG	4 cut(s)	190, 796, 931, 1090
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	4 cut(s)	248, 460, 537, 574
Cac8I	GCNNGC	5 cut(s)	255, 289, 558, 811, 898
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	3 cut(s)	50, 91, 299
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	401, 1069
Csp6I	GTAC	6 cut(s)	272, 471, 543, 623, 634, 826
CspAI	ACCGGT	1 cut(s)	103
CviAII	CATG	8 cut(s)	14, 72, 254, 352, 505, 810, 842, 1081
CviQI	GTAC	6 cut(s)	272, 471, 543, 623, 634, 826
DdeI	CTNAG	2 cut(s)	405, 1059
DpnI	GATC	3 cut(s)	121, 704, 765
DpnII	GATC	3 cut(s)	119, 702, 763
Eam1104I	CTCTTC	3 cut(s)	14, 391, 1155
EarI	CTCTTC	3 cut(s)	14, 391, 1155
Ecl136II	GAGCTC	3 cut(s)	153, 367, 686
Eco130I	CCWWGG	2 cut(s)	953, 1080
Eco24I	GRGCYC	3 cut(s)	155, 369, 688
Eco47I	GGWCC	2 cut(s)	401, 1069
Eco53kI	GAGCTC	3 cut(s)	153, 367, 686
Eco57I	CTGAAG	1 cut(s)	567
Eco88I	CYCGRG	2 cut(s)	509, 599
Eco91I	GGTNACC	1 cut(s)	992
EcoICRI	GAGCTC	3 cut(s)	153, 367, 686
EcoO109I	RGGNCCY	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	992
EcoRII	CCWGG	5 cut(s)	208, 881, 988, 996, 1065
EcoT14I	CCWWGG	2 cut(s)	953, 1080
EcoT38I	GRGCYC	3 cut(s)	155, 369, 688
ErhI	CCWWGG	2 cut(s)	953, 1080
FaeI	CATG	8 cut(s)	17, 75, 257, 355, 508, 813, 845, 1084
FalI	AAGNNNNNCTT	4 cut(s)	540, 572, 850, 882
FatI	CATG	8 cut(s)	13, 71, 253, 351, 504, 809, 841, 1080
Fnu4HI	GCNGC	8 cut(s)	77, 292, 295, 459, 494, 771, 774, 974
FokI	GGATG	4 cut(s)	197, 803, 938, 1097
FriOI	GRGCYC	3 cut(s)	155, 369, 688
Fsp4HI	GCNGC	8 cut(s)	77, 292, 295, 459, 494, 771, 774, 974
FspBI	CTAG	4 cut(s)	258, 275, 431, 617
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	3 cut(s)	49, 90, 298
GluI	GCNGC	8 cut(s)	77, 292, 295, 459, 494, 771, 774, 974
GsuI	CTGGAG	2 cut(s)	396, 598
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	3 cut(s)	50, 91, 299
Hin1II	CATG	8 cut(s)	17, 75, 257, 355, 508, 813, 845, 1084
Hin6I	GCGC	3 cut(s)	48, 89, 297
HinP1I	GCGC	3 cut(s)	48, 89, 297
HinfI	GANTC	5 cut(s)	4, 213, 278, 878, 1006
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	723
Hpy188I	TCNGA	6 cut(s)	124, 138, 329, 670, 877, 1120
Hpy188III	TCNNGA	5 cut(s)	352, 362, 370, 511, 1100
Hpy8I	GTNNAC	1 cut(s)	723
Hpy99I	CGWCG	2 cut(s)	940, 964
HpyAV	CCTTC	3 cut(s)	647, 958, 1196
HpyCH4III	ACNGT	3 cut(s)	57, 359, 455
HpyCH4IV	ACGT	2 cut(s)	196, 828
HpyCH4V	TGCA	6 cut(s)	13, 117, 253, 643, 770, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	405, 1059
HpySE526I	ACGT	2 cut(s)	196, 828
Hsp92II	CATG	8 cut(s)	17, 75, 257, 355, 508, 813, 845, 1084
HspAI	GCGC	3 cut(s)	48, 89, 297
Kzo9I	GATC	3 cut(s)	119, 702, 763
LmnI	GCTCC	5 cut(s)	150, 377, 579, 683, 1188
Lsp1109I	GCAGC	8 cut(s)	88, 278, 281, 445, 480, 760, 782, 960
MaeI	CTAG	4 cut(s)	258, 275, 431, 617
MaeII	ACGT	2 cut(s)	196, 828
MaeIII	GTNAC	1 cut(s)	992
MalI	GATC	3 cut(s)	121, 704, 765
MboI	GATC	3 cut(s)	119, 702, 763
MhlI	GDGCHC	4 cut(s)	155, 237, 369, 688
MluCI	AATT	6 cut(s)	130, 177, 441, 627, 712, 744
MlyI	GAGTC	2 cut(s)	207, 272
MmeI	TCCRAC	3 cut(s)	673, 855, 1034
MnlI	CCTC	9 cut(s)	15, 79, 216, 655, 673, 700, 781, 825, 1158
MroXI	GAANNNNTTC	3 cut(s)	323, 865, 1005
MseI	TTAA	2 cut(s)	227, 444
MspA1I	CMGCKG	2 cut(s)	79, 773
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	5 cut(s)	210, 883, 990, 998, 1067
Mva1269I	GAATGC	3 cut(s)	267, 323, 900
MvaI	CCWGG	5 cut(s)	210, 883, 990, 998, 1067
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	1080
NdeII	GATC	3 cut(s)	119, 702, 763
NlaIII	CATG	8 cut(s)	17, 75, 257, 355, 508, 813, 845, 1084
NsbI	TGCGCA	1 cut(s)	49
NspI	RCATGY	3 cut(s)	257, 508, 813
NspV	TTCGAA	1 cut(s)	1189
PaeI	GCATGC	2 cut(s)	257, 813
PaeR7I	CTCGAG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	3 cut(s)	267, 323, 900
PdmI	GAANNNNTTC	3 cut(s)	323, 865, 1005
PfeI	GAWTC	3 cut(s)	4, 878, 1006
PfoI	TCCNGGA	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	103
PkrI	GCNGC	8 cut(s)	78, 293, 296, 460, 495, 772, 775, 975
PleI	GAGTC	2 cut(s)	207, 272
PpsI	GAGTC	2 cut(s)	207, 272
PpuMI	RGGWCCY	1 cut(s)	401
Psp124BI	GAGCTC	3 cut(s)	155, 369, 688
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	5 cut(s)	208, 881, 988, 996, 1065
PspEI	GGTNACC	1 cut(s)	992
PspGI	CCWGG	5 cut(s)	208, 881, 988, 996, 1065
PspPI	GGNCC	2 cut(s)	401, 1069
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	404
PvuII	CAGCTG	2 cut(s)	79, 773
RsaI	GTAC	6 cut(s)	273, 472, 544, 624, 635, 827
RsaNI	GTAC	6 cut(s)	272, 471, 543, 623, 634, 826
SacI	GAGCTC	3 cut(s)	155, 369, 688
SaqAI	TTAA	2 cut(s)	227, 444
SatI	GCNGC	8 cut(s)	77, 292, 295, 459, 494, 771, 774, 974
Sau3AI	GATC	3 cut(s)	119, 702, 763
Sau96I	GGNCC	2 cut(s)	401, 1069
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	2 cut(s)	207, 272
ScrFI	CCNGG	5 cut(s)	210, 883, 990, 998, 1067
SduI	GDGCHC	4 cut(s)	155, 237, 369, 688
SfcI	CTRYAG	2 cut(s)	301, 768
Sfr274I	CTCGAG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	1189
SinI	GGWCC	2 cut(s)	401, 1069
SlaI	CTCGAG	1 cut(s)	509
SmlI	CTYRAG	3 cut(s)	362, 509, 785
SmoI	CTYRAG	3 cut(s)	362, 509, 785
SphI	GCATGC	2 cut(s)	257, 813
Sse9I	AATT	6 cut(s)	130, 177, 441, 627, 712, 744
SspMI	CTAG	4 cut(s)	258, 275, 431, 617
SstI	GAGCTC	3 cut(s)	155, 369, 688
StyD4I	CCNGG	5 cut(s)	208, 881, 988, 996, 1065
StyI	CCWWGG	2 cut(s)	953, 1080
TaaI	ACNGT	3 cut(s)	57, 359, 455
TaiI	ACGT	2 cut(s)	199, 831
TaqI	TCGA	4 cut(s)	510, 705, 821, 1189
TasI	AATT	6 cut(s)	130, 177, 441, 627, 712, 744
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	4, 878, 1006
Tru1I	TTAA	2 cut(s)	227, 444
Tru9I	TTAA	2 cut(s)	227, 444
TscAI	CASTG	4 cut(s)	255, 460, 544, 581
TseI	GCWGC	8 cut(s)	76, 291, 294, 458, 493, 770, 773, 973
TspRI	CASTG	4 cut(s)	255, 460, 544, 581
VpaK11BI	GGWCC	2 cut(s)	401, 1069
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	3 cut(s)	257, 508, 813
XhoI	CTCGAG	1 cut(s)	509
XmnI	GAANNNNTTC	3 cut(s)	323, 865, 1005
XspI	CTAG	4 cut(s)	258, 275, 431, 617
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.