pycom03g11060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0021887
Physical Location & Seq
Reverse (-)
10666321 .. 10668910
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 747 bp
ATGCAATCACCGCCGGCTACAATGGCGGCGGCGATGATGCTGCTCCTCCTGCCGATGGCGTCAACTGTGGTGAATGTGGGAGCATCTAACACAAACAGCGTGTACAACCCATGCGCAGACACCAAGATTCAGAGGTCCGACGGCTTTACATTCGGGATCGCATTCTCGTCCAAGACCTCCTTCACGCTAAACGGGAACCAGTCGCATCAGCTCTCCCCCTGCGACCGCCGCCTCTCGCTGTCCTCCTCCAACTCCCAGCTCGCGCTTTTTAGACCCAAAGTCGATGAGATCTCCCTCCTCACTATCAACACCTCTTCTTTCCAACCGGATTCATATGGTGGGTACATGGTGGCGTTTGCTGGACGAAAATATGCTGCAAGGTCTCTCCCTGCGTTTGTTGCAAACAGCACGTACATAGTGACAAGTTTTACGTTGGTACTCGAGTTTCAAAAGGGTAGGCTGCAAAACTTGTATTGGAAGAGAGACGGGTGTGCTAAATGCACAGGAAACTCCAATTTTGTTTGTCTTAACAAACAAGACTGTGCCATCCAAACATCAGGCTGTAAAAACCGAGGGGGTTCTGTAGATTGCAGTCTTGGGATACAACTGGCCTTTTCTGGTACAGATAAGCATCTCTCTGTTCTCAATTCATGGTATGAGGTGGAGAACCTTCGGCAGTATTCTCTCTATGGCTTGTATTCCAATCTCAGAGATTCTCTCACTAGCCAGTATAACAACTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.23

Weight (kDa)

9.01

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44150
malus_domestica MD03G1158900.v1.1 MD11G1174300.v1.1
pyrus_communis pycom03g11060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
AccII CGCG 1 cut(s) 263
AciI CCGC 5 cut(s) 11, 26, 29, 226, 229
AclWI GGATC 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 5 cut(s) 104, 344, 413, 438, 622
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 449
AhdI GACNNNNNGTC 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 211, 259
AluI AGCT 2 cut(s) 211, 259
Alw26I GTCTC 2 cut(s) 387, 477
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 3 cut(s) 40, 374, 460
AspLEI GCGC 2 cut(s) 116, 265
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 135
BaeI ACNNNNGTAYC 2 cut(s) 428, 461
BarI GAAGNNNNNNTAC 1 cut(s) 722
BbvI GCAGC 3 cut(s) 27, 361, 447
BccI CCATC 2 cut(s) 49, 554
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciVI GTATCC 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 387, 477
BfaI CTAG 1 cut(s) 723
BfmI CTRYAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 594
BglII AGATCT 1 cut(s) 288
BisI GCNGC 6 cut(s) 27, 30, 41, 229, 375, 461
BlsI GCNGC 6 cut(s) 28, 31, 42, 230, 376, 462
Bme18I GGWCC 1 cut(s) 135
BmeRI GACNNNNNGTC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 4 cut(s) 27, 92, 214, 640
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BsaAI YACGTR 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 571
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 3 cut(s) 199, 612, 727
Bse8I GATNNNNATC 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 1 cut(s) 546
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 721
BseNI ACTGG 3 cut(s) 199, 612, 727
BseRI GAGGAG 3 cut(s) 35, 235, 287
BseXI GCAGC 3 cut(s) 27, 361, 447
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 611
BsiEI CGRYCG 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 2 cut(s) 14, 326
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 2 cut(s) 387, 477
BsmBI CGTCTC 1 cut(s) 477
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 156, 288
BspACI CCGC 5 cut(s) 11, 26, 29, 226, 229
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 720
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 102
BsrI ACTGG 3 cut(s) 199, 612, 727
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 2 cut(s) 156, 288
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 67, 542
Bst6I CTCTTC 2 cut(s) 319, 473
BstACI GRCGYC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 15, 261
BstDEI CTNAG 1 cut(s) 707
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 2 cut(s) 116, 265
BstKTI GATC 2 cut(s) 159, 291
BstMAI GTCTC 2 cut(s) 387, 477
BstMBI GATC 2 cut(s) 156, 288
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 10, 23, 49, 228, 398
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 27, 361, 447
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 1 cut(s) 611
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 15, 261
CfoI GCGC 2 cut(s) 116, 265
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 48
Csp6I GTAC 5 cut(s) 103, 343, 412, 437, 621
CviAII CATG 3 cut(s) 111, 346, 651
CviJI RGCY 9 cut(s) 17, 144, 211, 259, 460, 561, 611, 693, 726
CviKI_1 RGCY 9 cut(s) 17, 144, 211, 259, 460, 561, 611, 693, 726
CviQI GTAC 5 cut(s) 103, 343, 412, 437, 621
DdeI CTNAG 1 cut(s) 707
DpnI GATC 2 cut(s) 158, 290
DpnII GATC 2 cut(s) 156, 288
DriI GACNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 319, 473
Eam1105I GACNNNNNGTC 1 cut(s) 278
EarI CTCTTC 2 cut(s) 319, 473
Eco31I GGTCTC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 440
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 3 cut(s) 114, 349, 654
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 3 cut(s) 110, 345, 650
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 6 cut(s) 27, 30, 41, 229, 375, 461
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 6 cut(s) 27, 30, 41, 229, 375, 461
FspBI CTAG 1 cut(s) 723
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 2 cut(s) 115, 264
GluI GCNGC 6 cut(s) 27, 30, 41, 229, 375, 461
GsaI CCCAGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 611
HapII CCGG 2 cut(s) 14, 326
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 116, 265
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 114, 349, 654
Hin6I GCGC 2 cut(s) 114, 263
HinP1I GCGC 2 cut(s) 114, 263
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 127, 329, 713
HpaII CCGG 2 cut(s) 14, 326
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 63, 103
Hpy188I TCNGA 3 cut(s) 132, 139, 710
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 63, 103
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 190, 680
HpyCH4III ACNGT 2 cut(s) 67, 542
HpyCH4IV ACGT 2 cut(s) 410, 431
HpyCH4V TGCA 6 cut(s) 4, 377, 401, 463, 501, 591
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 23, 49, 228, 398
HpyF3I CTNAG 1 cut(s) 707
HpySE526I ACGT 2 cut(s) 410, 431
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 114, 349, 654
HspAI GCGC 2 cut(s) 114, 263
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 156, 288
LmnI GCTCC 2 cut(s) 48, 80
Lsp1109I GCAGC 3 cut(s) 27, 361, 447
LweI GCATC 4 cut(s) 27, 92, 214, 640
MaeI CTAG 1 cut(s) 723
MaeII ACGT 2 cut(s) 410, 431
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 158, 290
MboI GATC 2 cut(s) 156, 288
MboII GAAGA 2 cut(s) 306, 490
MflI RGATCY 1 cut(s) 288
MluCI AATT 2 cut(s) 514, 646
MmeI TCCRAC 3 cut(s) 162, 273, 346
MroNI GCCGGC 1 cut(s) 13
MseI TTAA 2 cut(s) 528, 745
MspI CCGG 2 cut(s) 14, 326
Mva1269I GAATGC 1 cut(s) 161
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 5 cut(s) 10, 23, 49, 228, 398
NaeI GCCGGC 1 cut(s) 15
NdeI CATATG 1 cut(s) 334
NdeII GATC 2 cut(s) 156, 288
NgoMIV GCCGGC 1 cut(s) 13
NlaIII CATG 3 cut(s) 114, 349, 654
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 418
NsbI TGCGCA 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 440
PctI GAATGC 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 3 cut(s) 127, 329, 713
PkrI GCNGC 6 cut(s) 28, 31, 42, 230, 376, 462
Ppu21I YACGTR 1 cut(s) 411
PspFI CCCAGC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 135
PspXI VCTCGAGB 1 cut(s) 440
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 5 cut(s) 104, 344, 413, 438, 622
RsaNI GTAC 5 cut(s) 103, 343, 412, 437, 621
SaqAI TTAA 2 cut(s) 528, 745
SatI GCNGC 6 cut(s) 27, 30, 41, 229, 375, 461
Sau3AI GATC 2 cut(s) 156, 288
Sau96I GGNCC 1 cut(s) 135
SfaNI GCATC 4 cut(s) 27, 92, 214, 640
SfcI CTRYAG 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 2 cut(s) 514, 646
SsiI CCGC 5 cut(s) 11, 26, 29, 226, 229
SspMI CTAG 1 cut(s) 723
TaaI ACNGT 2 cut(s) 67, 542
TaiI ACGT 2 cut(s) 413, 434
TaqI TCGA 2 cut(s) 282, 441
TasI AATT 2 cut(s) 514, 646
TatI WGTACW 1 cut(s) 102
TauI GCSGC 3 cut(s) 29, 32, 231
TfiI GAWTC 3 cut(s) 127, 329, 713
Tru1I TTAA 2 cut(s) 528, 745
Tru9I TTAA 2 cut(s) 528, 745
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 40, 374, 460
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 321, 639
VpaK11BI GGWCC 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 440
XspI CTAG 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.