Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0020990

Physical Location & Seq

Genomic Coordinates Forward (+)

19010902 .. 19011264

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCGGGCTTTCAATGAAGTCTACCACGTGCTCGTGGAAATGCACAAGAGAGAGGGACTTATCAGTGAAGGAACATATGAGATTTTACAAGAGAAGGAGTTTGGTCTCGAGCTTGATTTGGTTGCGTTTCAGAAGCTTATACTGTGGTTATGCCGGCATAAGCATGTAGAAGCTGTGGAAGCTTTGTTTAACGTGAAGGGAAAAGAGTTCGGGCAAGATATAAAAACGTGGAATATATTCTTAATGGATGGTGTGTGCGAGCGAAGCGAGGCGAAAAGGTTTTGGAAAGGAAAGGAAAGTTGGGTACGGCACTCAAGTTATTTCGAGCAATGTGGGATCAGGGTTGCAACCCAGACGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

121

Amino Acids

14.28

Weight (kDa)

6.52

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15200
malus_domestica	MD03G1231900.v1.1 MD11G1253000.v1.1
prunus_persica	Prupe.4G176100_v2.0.a1
pyrus_communis	pycom03g17930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	4 cut(s)	112, 136, 173, 182
AluI	AGCT	4 cut(s)	112, 136, 173, 182
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	107
BauI	CACGAG	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	4
BspPI	GGATC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssMI	GATC	1 cut(s)	336
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	6, 155, 260
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 264
BstNSI	RCATGY	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	6, 155, 260
Cfr10I	RCCGGY	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	8, 112, 136, 173, 182
CviKI_1	RGCY	5 cut(s)	8, 112, 136, 173, 182
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	107
FaeI	CATG	1 cut(s)	167
FaiI	YATR	8 cut(s)	76, 78, 140, 151, 159, 165, 221, 236
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	21
FokI	GGATG	1 cut(s)	260
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	1 cut(s)	167
HindIII	AAGCTT	2 cut(s)	134, 180
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	62, 88, 190
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	4 cut(s)	27, 192, 227, 356
HpyCH4V	TGCA	2 cut(s)	43, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 264
HpySE526I	ACGT	4 cut(s)	27, 192, 227, 356
Hsp92II	CATG	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	2 cut(s)	167, 325
MaeII	ACGT	4 cut(s)	27, 192, 227, 356
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	46, 262
MroNI	GCCGGC	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	2 cut(s)	189, 242
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	179, 264
NaeI	GCCGGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	167
NspI	RCATGY	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	236
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	189, 242
Sau3AI	GATC	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	30, 114, 138, 175, 184, 195, 230, 281, 359
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	107, 313
SmoI	CTYRAG	2 cut(s)	107, 313
SsiI	CCGC	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	4 cut(s)	30, 195, 230, 359
TaqI	TCGA	2 cut(s)	108, 324
Tru1I	TTAA	2 cut(s)	189, 242
Tru9I	TTAA	2 cut(s)	189, 242
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	70
XceI	RCATGY	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.