Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0018277

Physical Location & Seq

Genomic Coordinates Reverse (-)

23496076 .. 23497789

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGACATCCTTGTTCAATACAAAATTCAACTTCCCCTATGAAAAAGATGTTCTGAAAAATCGGCACAAAACACTAAGGAATTTGTACAAGGCTGTAAAAATCCTCCTTCATCAGAGGGGATTCAGTTGGGATGAAACGCGACAAATGGTGACTGCTGATAATAATGCCTGGGATGGATATATTAAGGTACACCCAGATGCACGGTCATTCAGAATAAAAACCATCCCTTATTACCGTGATTTGTGTTTGATATATGGTGACGCAGCATTCGAAGAGAAAGGTGATAATGTTCCCGAGGAGTCATCACATTCAAGCGAGACTGGTAAAACAGCAGCCACACAGCCGACAAACATTAATCAGGACACAGCAGAGGCTCTTCGTGATATCATTGTTGGTGAGGATTATGGAGTCACTATCTCAGAAAAATGTTTTGATTTTAGACAGCATGCTATTACAAGTGTTCCTGAAATCACTGCTAGTAATCGCTCCAGAACTTACTGGCAGCCGCCCATGGACTGTTATTTCATTGACCTTTTGCAAGAACAGGTGCAGAAAGGCAGCAGGGTTGATGGTGTGTTTCGTAAACAAGCTTGGAAGGAGATGATTGCATTATTCAACACTAAGTTTGGCTTTAATTATGATATGGATGTTCTTAAAAATCGGCACAAAACTCTGAAAAGGCAATATAATGTTATAAAGAATCTACTTGAATTAGATGGCTTTAGTTGGGATGATAAGCGCCATATGGTGACAGCTGATGATTATGTTTGGCAAGATTATATTAAGGAACATACTGATGCACGGCAGTTCATGACCCGACCTGTCCCATATTATAAAGATTTATGCATGATATGTGATCCAAGTCTTGATGACAGAGACTGCTATTCAGGTCAAGGTGTAGAGCAACAAAATCAAGTTGAGGGCGCCAAATTCTGTGGAGCATTAACTAGTCTTCAGTCTGCATCTACATCAGTTTCCACCGAGGATGATGTTGTTGAGGTGCAGGAGTCGAGCCTTATGTCCCATAAGAAAAGGCGTCAACTAGAAAACTGCTCAAATCAGTCTCATCCAAAAAGATCCCGAGAAGCAGATGGTGGCATGGCTAGTGCTCTTCGTGAGATGGCATCTGCTGTTTCATCGCTGTCAGATAAGAAGAGAAATGATGGGAACATGAACTCTGGCTCAATAGAAAGTGTGATTGAAGCAATACAAGCATTACCAGACATGGACGAAGACCTCGTGTTAGATGCTTGTGATTTGCTAGAGGATGAAAACAAGGCAAAAACATTTATGGCATTGGATGTTAAATTACGAAAGAAGTGGTTAACGAGGAAGCTTCGGTCGCATTTGGCAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

453

Amino Acids

51.94

Weight (kDa)

5.95

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	1 - 60	5.5e-16	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3	PF12776	166 - 260	2.2e-32	Myb/SANT-like DNA-binding domain
At2g29880_C	PF24769	400 - 445	3.3e-07	At2g29880 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02210 AT4G02210
malus_domestica	MD03G1298700.v1.1
prunus_persica	Prupe.8G268300_v2.0.a1 Prupe.8G268300_v2.0.a1 Prupe.8G268300_v2.0.a1 Prupe.8G268300_v2.0.a1 Prupe.8G268300_v2.0.a1 Prupe.8G268300_v2.0.a1
pyrus_communis	pycom03g23670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	695, 834
AccB1I	GGYRCC	1 cut(s)	923
AccII	CGCG	1 cut(s)	139
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	2 cut(s)	851, 1071
AcsI	RAATTY	3 cut(s)	23, 79, 929
AcuI	CTGAAG	1 cut(s)	938
AcyI	GRCGYC	2 cut(s)	924, 1036
AfaI	GTAC	2 cut(s)	86, 189
AgsI	TTSAA	6 cut(s)	16, 28, 312, 616, 710, 1202
AhlI	ACTAGT	1 cut(s)	947
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	590, 755, 1336
AluI	AGCT	3 cut(s)	590, 755, 1336
Alw21I	GWGCWC	1 cut(s)	1111
Alw26I	GTCTC	3 cut(s)	311, 870, 1068
AlwI	GGATC	2 cut(s)	851, 1071
AlwNI	CAGNNNCTG	1 cut(s)	879
Ama87I	CYCGRG	2 cut(s)	293, 1080
ApeKI	GCWGC	4 cut(s)	263, 332, 502, 558
ApoI	RAATTY	3 cut(s)	23, 79, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AseI	ATTAAT	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	741, 926
AsuHPI	GGTGA	5 cut(s)	160, 269, 293, 407, 760
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	2 cut(s)	293, 1080
BanI	GGYRCC	1 cut(s)	923
BauI	CACGAG	1 cut(s)	1238
BbsI	GAAGAC	2 cut(s)	944, 1239
Bbv12I	GWGCWC	1 cut(s)	1111
BbvI	GCAGC	4 cut(s)	275, 344, 514, 570
BccI	CCATC	7 cut(s)	167, 230, 563, 710, 1085, 1114, 1157
BceAI	ACGGC	1 cut(s)	818
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	311, 870, 1068
BcuI	ACTAGT	1 cut(s)	947
BfaI	CTAG	5 cut(s)	477, 948, 1043, 1104, 1262
BfoI	RGCGCY	2 cut(s)	742, 927
BisI	GCNGC	5 cut(s)	264, 333, 503, 506, 559
BlsI	GCNGC	5 cut(s)	265, 334, 504, 507, 560
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	293, 1080
BmiI	GGNNCC	1 cut(s)	925
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	5 cut(s)	187, 787, 971, 1133, 1237
BpiI	GAAGAC	2 cut(s)	944, 1239
BpmI	CTGGAG	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	270
BsaHI	GRCGYC	2 cut(s)	924, 1036
BsaJI	CCNNGG	4 cut(s)	168, 294, 510, 981
Bse1I	ACTGG	2 cut(s)	325, 503
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	4 cut(s)	168, 294, 510, 981
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	325, 503
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	275, 344, 514, 570
BsgI	GTGCAG	2 cut(s)	569, 1022
Bsh1236I	CGCG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	1343
BshNI	GGYRCC	1 cut(s)	923
BsiEI	CGRYCG	1 cut(s)	1343
BsiHKAI	GWGCWC	1 cut(s)	1111
BsiHKCI	CYCGRG	2 cut(s)	293, 1080
BslFI	GGGAC	2 cut(s)	809, 1006
BsmAI	GTCTC	3 cut(s)	311, 870, 1068
BsmFI	GGGAC	2 cut(s)	809, 1006
BsmI	GAATGC	1 cut(s)	266
BsoBI	CYCGRG	2 cut(s)	293, 1080
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	1111
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	856, 1076
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	1 cut(s)	506
BspCNI	CTCAG	1 cut(s)	431
BspFNI	CGCG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	925
BspPI	GGATC	2 cut(s)	851, 1071
BspQI	GCTCTTC	2 cut(s)	381, 1116
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	923
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	325, 503
BssECI	CCNNGG	4 cut(s)	168, 294, 510, 981
BssMI	GATC	2 cut(s)	856, 1076
BssNI	GRCGYC	2 cut(s)	924, 1036
BssSI	CACGAG	1 cut(s)	1238
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	1238
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	204, 236, 518
Bst6I	CTCTTC	4 cut(s)	267, 381, 1116, 1148
BstACI	GRCGYC	2 cut(s)	924, 1036
BstAUI	TGTACA	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	74, 418, 621
BstDSI	CCRYGG	1 cut(s)	510
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	2 cut(s)	742, 927
BstHHI	GCGC	2 cut(s)	741, 926
BstKTI	GATC	2 cut(s)	859, 1079
BstMAI	GTCTC	3 cut(s)	311, 870, 1068
BstMBI	GATC	2 cut(s)	856, 1076
BstMCI	CGRYCG	1 cut(s)	1343
BstMWI	GCNNNNNNNGC	2 cut(s)	1211, 1342
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	4 cut(s)	275, 344, 514, 570
BstV2I	GAAGAC	2 cut(s)	944, 1239
BstX2I	RGATCY	1 cut(s)	1076
BstYI	RGATCY	1 cut(s)	1076
BtgI	CCRYGG	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	1122
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	879
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	2 cut(s)	741, 926
CseI	GACGC	2 cut(s)	269, 1025
Csp6I	GTAC	2 cut(s)	85, 188
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviAII	CATG	7 cut(s)	446, 511, 811, 847, 1099, 1171, 1225
CviQI	GTAC	2 cut(s)	85, 188
DdeI	CTNAG	3 cut(s)	74, 418, 621
DinI	GGCGCC	1 cut(s)	925
DpnI	GATC	2 cut(s)	858, 1078
DpnII	GATC	2 cut(s)	856, 1076
Eam1104I	CTCTTC	4 cut(s)	267, 381, 1116, 1148
EarI	CTCTTC	4 cut(s)	267, 381, 1116, 1148
Eco130I	CCWWGG	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	938
Eco88I	CYCGRG	2 cut(s)	293, 1080
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	848
EgeI	GGCGCC	1 cut(s)	925
EheI	GGCGCC	1 cut(s)	925
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	7 cut(s)	449, 514, 814, 850, 1102, 1174, 1228
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	2 cut(s)	809, 1006
FatI	CATG	7 cut(s)	445, 510, 810, 846, 1098, 1170, 1224
FauNDI	CATATG	1 cut(s)	744
Fnu4HI	GCNGC	5 cut(s)	264, 333, 503, 506, 559
FokI	GGATG	9 cut(s)	143, 185, 209, 659, 743, 998, 1053, 1280, 1313
Fsp4HI	GCNGC	5 cut(s)	264, 333, 503, 506, 559
FspBI	CTAG	5 cut(s)	477, 948, 1043, 1104, 1262
GlaI	GCGC	2 cut(s)	740, 925
GluI	GCNGC	5 cut(s)	264, 333, 503, 506, 559
GsuI	CTGGAG	1 cut(s)	472
HaeII	RGCGCY	2 cut(s)	742, 927
HgaI	GACGC	2 cut(s)	269, 1025
HhaI	GCGC	2 cut(s)	741, 926
Hin1I	GRCGYC	2 cut(s)	924, 1036
Hin1II	CATG	7 cut(s)	449, 514, 814, 850, 1102, 1174, 1228
Hin6I	GCGC	2 cut(s)	739, 924
HinP1I	GCGC	2 cut(s)	739, 924
HincII	GTYRAC	2 cut(s)	1040, 1326
HindII	GTYRAC	2 cut(s)	1040, 1326
HindIII	AAGCTT	2 cut(s)	588, 1334
HinfI	GANTC	5 cut(s)	120, 299, 408, 700, 1007
HpaI	GTTAAC	1 cut(s)	1326
HphI	GGTGA	5 cut(s)	160, 269, 293, 407, 760
Hpy166II	GTNNAC	4 cut(s)	190, 584, 1040, 1326
Hpy188I	TCNGA	6 cut(s)	54, 114, 212, 421, 675, 1147
Hpy188III	TCNNGA	9 cut(s)	293, 359, 380, 464, 489, 811, 866, 1080, 1115
Hpy8I	GTNNAC	4 cut(s)	190, 584, 1040, 1326
HpyAV	CCTTC	2 cut(s)	116, 589
HpyCH4III	ACNGT	3 cut(s)	204, 236, 518
HpyCH4IV	ACGT	1 cut(s)	1355
HpyCH4V	TGCA	8 cut(s)	200, 538, 550, 608, 800, 846, 962, 1003
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1211, 1342
HpyF3I	CTNAG	3 cut(s)	74, 418, 621
HpySE526I	ACGT	1 cut(s)	1355
Hsp92I	GRCGYC	2 cut(s)	924, 1036
Hsp92II	CATG	7 cut(s)	449, 514, 814, 850, 1102, 1174, 1228
HspAI	GCGC	2 cut(s)	739, 924
KasI	GGCGCC	1 cut(s)	923
KspAI	GTTAAC	1 cut(s)	1326
Kzo9I	GATC	2 cut(s)	856, 1076
LguI	GCTCTTC	2 cut(s)	381, 1116
LmnI	GCTCC	2 cut(s)	491, 938
Lsp1109I	GCAGC	4 cut(s)	275, 344, 514, 570
LweI	GCATC	5 cut(s)	187, 787, 971, 1133, 1237
MaeI	CTAG	5 cut(s)	477, 948, 1043, 1104, 1262
MaeII	ACGT	1 cut(s)	1355
MaeIII	GTNAC	4 cut(s)	148, 257, 409, 748
MalI	GATC	2 cut(s)	858, 1078
MboI	GATC	2 cut(s)	856, 1076
MboII	GAAGA	6 cut(s)	284, 368, 944, 1103, 1165, 1244
MflI	RGATCY	1 cut(s)	1076
MhlI	GDGCHC	1 cut(s)	1111
MluCI	AATT	6 cut(s)	23, 79, 634, 710, 929, 1307
Mly113I	GGCGCC	1 cut(s)	924
MlyI	GAGTC	3 cut(s)	308, 417, 1016
Mph1103I	ATGCAT	1 cut(s)	848
MseI	TTAA	8 cut(s)	183, 354, 633, 654, 783, 944, 1305, 1325
MslI	CAYNNNNRTG	2 cut(s)	195, 795
MspA1I	CMGCKG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	1211, 1342
NarI	GGCGCC	1 cut(s)	924
NcoI	CCATGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	2 cut(s)	856, 1076
NlaIII	CATG	7 cut(s)	449, 514, 814, 850, 1102, 1174, 1228
NlaIV	GGNNCC	1 cut(s)	925
NmuCI	GTSAC	4 cut(s)	148, 257, 409, 748
NsiI	ATGCAT	1 cut(s)	848
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	449
PagI	TCATGA	1 cut(s)	810
PciSI	GCTCTTC	2 cut(s)	381, 1116
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 1236
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	120, 700
PkrI	GCNGC	5 cut(s)	265, 334, 504, 507, 560
PleI	GAGTC	3 cut(s)	307, 416, 1015
PluTI	GGCGCC	1 cut(s)	927
PpsI	GAGTC	3 cut(s)	307, 416, 1015
PshBI	ATTAAT	1 cut(s)	354
PsiI	TTATAA	2 cut(s)	695, 834
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	1076
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	2 cut(s)	86, 189
RsaNI	GTAC	2 cut(s)	85, 188
RseI	CAYNNNNRTG	2 cut(s)	195, 795
SapI	GCTCTTC	2 cut(s)	381, 1116
SaqAI	TTAA	8 cut(s)	183, 354, 633, 654, 783, 944, 1305, 1325
SatI	GCNGC	5 cut(s)	264, 333, 503, 506, 559
Sau3AI	GATC	2 cut(s)	856, 1076
SchI	GAGTC	3 cut(s)	308, 417, 1016
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	1111
SfaNI	GCATC	5 cut(s)	187, 787, 971, 1133, 1237
SfoI	GGCGCC	1 cut(s)	925
SfuI	TTCGAA	1 cut(s)	270
SmiMI	CAYNNNNRTG	2 cut(s)	195, 795
SpeI	ACTAGT	1 cut(s)	947
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	6 cut(s)	23, 79, 634, 710, 929, 1307
SsiI	CCGC	1 cut(s)	506
SspDI	GGCGCC	1 cut(s)	923
SspMI	CTAG	5 cut(s)	477, 948, 1043, 1104, 1262
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	204, 236, 518
TaiI	ACGT	1 cut(s)	1358
TaqI	TCGA	2 cut(s)	270, 1010
TaqII	GACCGA	1 cut(s)	1329
TasI	AATT	6 cut(s)	23, 79, 634, 710, 929, 1307
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	120, 700
Tru1I	TTAA	8 cut(s)	183, 354, 633, 654, 783, 944, 1305, 1325
Tru9I	TTAA	8 cut(s)	183, 354, 633, 654, 783, 944, 1305, 1325
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	4 cut(s)	148, 257, 409, 748
TseI	GCWGC	4 cut(s)	263, 332, 502, 558
Tsp45I	GTSAC	4 cut(s)	148, 257, 409, 748
TspDTI	ATGAA	8 cut(s)	54, 98, 147, 514, 799, 1125, 1187, 1284
TspRI	CASTG	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	3 cut(s)	23, 79, 929
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	5 cut(s)	477, 948, 1043, 1104, 1262
Zsp2I	ATGCAT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.