Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0016121

Physical Location & Seq

Genomic Coordinates Reverse (-)

1219742 .. 1221139

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGTTTTCGGCAATGGCTTCTCCGCCAGACACAAGCAAGACCATAAAGCTGGAGCGCTACAACAGCTACCTCCGCAGGGTCAACAGCACCAAGCTCCTCAACGCCTCCTCCAAGCTCCTCTTCCGCGCCACCCTCCTCGTCGCCCTCGTCCTCATCTTATTCTTCACCCTCAACTACCCTCCGCTCTCCGATCACGTCGGCGGTGGGGCCAACCACGTCCACACCACTCACAACTTTCTCTCCTCCGCTTTCTACGGTGGGGGAGTGGGAGGGACTGCTTGGGAAAAGCAGGTCCGCAAGTCTGCCACTCCTAGACGCCCCAACGGCATGTCGGTGCTGGTCACCGGCGCGGCCGGCTTTGTCGGGTCTCACTGCTCCCTCGCCTTAAAAAAGCGGGGCGATGGAGTTCTGGGACTCGACAACTTCAACTCCTACTACGACCCTTCGCTAAAGCGGTCGAGGCAGGCCCTGCTGAAGAAGCATGAGGTTTTCGTCGTGGAGGGGGACTTGAACGACGAGCCACTGCTGACGAAGCTGTTCGATGTGGTGCCGTTCACTCACATCCTGCACCTGGCGGCCCAAGCGGGCGTCCGGTACGCTATGCAGAACCCGCAGTCGTACGTGAGCTCCAACATTGCCGGGTTCGTCAATCTCCTCGAAGTGGCAAAAAGAGCAAATCCTCAGCCCTCCATTATCTGGGCCTCGTCCAGCTCGGTCTACGGGCTCAACACTGACAACCCGTTTTCCGAGCTACACAGGACTGACCAACCGGCCAGTCTCTACGCGGCAACAAAAAAAGCCGGTGAGGAAATCGCCCACACTTACAATCATATTTACGGGCTTTCCCTCACCGGCTTAAGATTTTTTACCGTGTACGGACCGTGGGGGAGACCCGACATGGCGTATTTCTTTTTCACCAAGGACATACTGCAGGGTAAACCGATCGACGTCTACAAAACAGTGGACGACAAGGAAGTAGCACGTGACTTCACGTACATTGACGACGTCGTAAAAGGGTGCCTGGGAGCGTTGGACACAGCCCAAAAAAGCACGGGAAGTGGGGGCAAAAAGAAAGGCCCCGCCCAGCTGCGAATTTACAACCTCGGCAACACGTCGCCGGTGCCGGTGGGGAAACTGGTGTCGATACTGGAAGGGCTTCTAAGCACGAAGGCGAAGAAGCACGTGATCAAGATGCCGAGAAACGGGGACGTGCCCTACACGCACGCCAATGTGACCCTGGCGTACAAGGACTTTGGGTACAAACCCACCACGGATTTGGCCAGCGGGCTGAGGAAGTTCGTCAAGTGGTACGTCAGTTATTACGGGATCGAGTCGAGGGTAAAAAAGGAAATGGACAGCGGTAAGAAGGGCAGTCAGCAAACCGACGAATCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016051 GO:0016053 GO:0019586 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032787 GO:0033481 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046394 GO:0050829 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0097708 GO:0098542 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

466

Amino Acids

51.07

Weight (kDa)

9.57

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	110 - 294	8.3e-11	RmlD substrate binding domain
Epimerase	PF01370	112 - 349	2.8e-49	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	112 - 348	1.8e-08	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	113 - 432	4.3e-45	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	113 - 344	2.4e-13	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23820
fragaria_vesca	FvH4_4g13320
malus_domestica	MD05G1230600.v1.1
prunus_persica	Prupe.1G164800_v2.0.a1
pyrus_communis	pycom04g01330
rosa_chinensis	RchiOBHm_Chr4g0413621
rosa_laevigata	RLG00000008205
rosa_multiflora	Rmu_sc0008583.1_g000001 Rmu_sc0026643.1_g000001
rosa_rugosa	Rorug04G0121700
rosa_samantha	Rh4AG181200 Rh4BG180400 Rh4CG192400 Rh4DG176600
rosa_wichuraiana	Rw4G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	951, 1008
Acc36I	ACCTGC	1 cut(s)	280
AccB1I	GGYRCC	3 cut(s)	547, 1017, 1120
AccB7I	CCANNNNNTGG	1 cut(s)	696
AccBSI	CCGCTC	1 cut(s)	184
AccI	GTMKAC	2 cut(s)	717, 951
AccII	CGCG	3 cut(s)	126, 350, 785
AclWI	GGATC	1 cut(s)	1334
AcoI	YGGCCR	3 cut(s)	351, 771, 1278
AcsI	RAATTY	1 cut(s)	1092
AcuI	CTGAAG	1 cut(s)	494
AcvI	CACGTG	2 cut(s)	983, 1183
AcyI	GRCGYC	4 cut(s)	316, 588, 948, 1005
AfaI	GTAC	7 cut(s)	596, 620, 875, 995, 1244, 1259, 1310
AfeI	AGCGCT	1 cut(s)	56
AfiI	CCNNNNNNNGG	5 cut(s)	76, 571, 661, 696, 1202
AflII	CTTAAG	1 cut(s)	856
AflIII	ACRYGT	1 cut(s)	1110
AgsI	TTSAA	2 cut(s)	427, 511
AjiI	CACGTC	4 cut(s)	196, 217, 1113, 1210
AjnI	CCWGG	3 cut(s)	570, 1020, 1236
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	9 cut(s)	49, 66, 94, 115, 535, 627, 711, 751, 1087
AluI	AGCT	9 cut(s)	49, 66, 94, 115, 535, 627, 711, 751, 1087
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	3 cut(s)	372, 782, 883
AlwI	GGATC	1 cut(s)	1334
AlwNI	CAGNNNCTG	1 cut(s)	469
Aor51HI	AGCGCT	1 cut(s)	56
AoxI	GGCC	8 cut(s)	207, 351, 465, 576, 699, 771, 1075, 1278
ApeKI	GCWGC	1 cut(s)	1087
ApoI	RAATTY	1 cut(s)	1092
Asp700I	GAANNNNTTC	2 cut(s)	536, 1155
AspLEI	GCGC	3 cut(s)	57, 128, 350
AspS9I	GGNCC	7 cut(s)	207, 292, 466, 577, 699, 878, 1076
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	5 cut(s)	157, 334, 815, 841, 907
AvaII	GGWCC	2 cut(s)	292, 878
BaeGI	GKGCMC	1 cut(s)	1215
BaeI	ACNNNNGTAYC	2 cut(s)	1300, 1333
BalI	TGGCCA	1 cut(s)	1280
BanI	GGYRCC	3 cut(s)	547, 1017, 1120
BanII	GRGCYC	2 cut(s)	629, 726
BbrPI	CACGTG	2 cut(s)	983, 1183
Bbv12I	GWGCWC	1 cut(s)	629
BbvCI	CCTCAGC	2 cut(s)	681, 1289
BbvI	GCAGC	1 cut(s)	1074
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	2 cut(s)	340, 535
BciT130I	CCWGG	3 cut(s)	572, 1022, 1238
BclI	TGATCA	1 cut(s)	1185
BcnI	CCSGG	1 cut(s)	640
BcoDI	GTCTC	3 cut(s)	372, 782, 883
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	929
BfoI	RGCGCY	1 cut(s)	58
BfrI	CTTAAG	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	324
BisI	GCNGC	4 cut(s)	351, 576, 786, 1088
BlsI	GCNGC	4 cut(s)	352, 577, 787, 1089
Bme1390I	CCNGG	4 cut(s)	572, 640, 1022, 1238
Bme18I	GGWCC	2 cut(s)	292, 878
BmgBI	CACGTC	4 cut(s)	196, 217, 1113, 1210
BmgT120I	GGNCC	7 cut(s)	207, 292, 466, 577, 699, 878, 1076
BmiI	GGNNCC	5 cut(s)	208, 549, 1019, 1078, 1122
BmrFI	CCNGG	4 cut(s)	572, 640, 1022, 1238
BmsI	GCATC	1 cut(s)	1182
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	681, 1289
BpuMI	CCSGG	1 cut(s)	640
BsaAI	YACGTR	4 cut(s)	622, 983, 993, 1183
BsaHI	GRCGYC	4 cut(s)	316, 588, 948, 1005
BsaI	GGTCTC	2 cut(s)	372, 883
BsaJI	CCNNGG	6 cut(s)	881, 918, 1021, 1102, 1236, 1269
BsaWI	WCCGGW	2 cut(s)	591, 1391
BsaXI	ACNNNNNCTCC	8 cut(s)	92, 122, 224, 254, 413, 443, 611, 641
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 571, 661, 696, 1202
Bse118I	RCCGGY	7 cut(s)	344, 353, 769, 800, 851, 1117, 1123
Bse1I	ACTGG	3 cut(s)	774, 1140, 1152
Bse3DI	GCAATG	2 cut(s)	18, 633
BseBI	CCWGG	3 cut(s)	572, 1022, 1238
BseDI	CCNNGG	6 cut(s)	881, 918, 1021, 1102, 1236, 1269
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	5 cut(s)	76, 571, 661, 696, 1202
BseMI	GCAATG	2 cut(s)	18, 633
BseMII	CTCAG	2 cut(s)	695, 1280
BseNI	ACTGG	3 cut(s)	774, 1140, 1152
BseRI	GAGGAG	6 cut(s)	86, 97, 107, 125, 232, 644
BseSI	GKGCMC	1 cut(s)	1215
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	1074
BseYI	CCCAGC	1 cut(s)	1083
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	3 cut(s)	126, 350, 785
Bsh1285I	CGRYCG	3 cut(s)	354, 458, 945
BshFI	GGCC	8 cut(s)	209, 353, 467, 578, 701, 773, 1077, 1280
BshNI	GGYRCC	3 cut(s)	547, 1017, 1120
BsiEI	CGRYCG	3 cut(s)	354, 458, 945
BsiHKAI	GWGCWC	1 cut(s)	629
BsiWI	CGTACG	1 cut(s)	618
BslFI	GGGAC	4 cut(s)	286, 426, 518, 1220
BslI	CCNNNNNNNGG	5 cut(s)	76, 571, 661, 696, 1202
BsmAI	GTCTC	3 cut(s)	372, 782, 883
BsmFI	GGGAC	4 cut(s)	286, 426, 518, 1220
BsnI	GGCC	8 cut(s)	209, 353, 467, 578, 701, 773, 1077, 1280
Bso31I	GGTCTC	2 cut(s)	372, 883
Bsp1286I	GDGCHC	3 cut(s)	629, 726, 1215
Bsp143I	GATC	4 cut(s)	190, 942, 1185, 1326
BspANI	GGCC	8 cut(s)	209, 353, 467, 578, 701, 773, 1077, 1280
BspCNI	CTCAG	2 cut(s)	694, 1281
BspFNI	CGCG	3 cut(s)	126, 350, 785
BspLI	GGNNCC	5 cut(s)	208, 549, 1019, 1078, 1122
BspMAI	CTGCAG	1 cut(s)	933
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	1334
BspT107I	GGYRCC	3 cut(s)	547, 1017, 1120
BspTI	CTTAAG	1 cut(s)	856
BspTNI	GGTCTC	2 cut(s)	372, 883
BsrBI	CCGCTC	1 cut(s)	184
BsrDI	GCAATG	2 cut(s)	18, 633
BsrFI	RCCGGY	7 cut(s)	344, 353, 769, 800, 851, 1117, 1123
BsrI	ACTGG	3 cut(s)	774, 1140, 1152
BssAI	RCCGGY	7 cut(s)	344, 353, 769, 800, 851, 1117, 1123
BssECI	CCNNGG	6 cut(s)	881, 918, 1021, 1102, 1236, 1269
BssMI	GATC	4 cut(s)	190, 942, 1185, 1326
BssNI	GRCGYC	4 cut(s)	316, 588, 948, 1005
BssT1I	CCWWGG	1 cut(s)	918
Bst2UI	CCWGG	3 cut(s)	572, 1022, 1238
Bst4CI	ACNGT	4 cut(s)	257, 871, 882, 961
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	4 cut(s)	316, 588, 948, 1005
BstAFI	CTTAAG	1 cut(s)	856
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstBAI	YACGTR	4 cut(s)	622, 983, 993, 1183
BstC8I	GCNNGC	6 cut(s)	355, 465, 586, 1224, 1282, 1286
BstDEI	CTNAG	3 cut(s)	681, 1160, 1289
BstDSI	CCRYGG	2 cut(s)	881, 1269
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	3 cut(s)	126, 350, 785
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	3 cut(s)	57, 128, 350
BstKTI	GATC	4 cut(s)	193, 945, 1188, 1329
BstMAI	GTCTC	3 cut(s)	372, 782, 883
BstMBI	GATC	4 cut(s)	190, 942, 1185, 1326
BstMCI	CGRYCG	3 cut(s)	354, 458, 945
BstNI	CCWGG	3 cut(s)	572, 1022, 1238
BstNSI	RCATGY	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	4 cut(s)	570, 638, 1020, 1236
BstSFI	CTRYAG	1 cut(s)	929
BstSLI	GKGCMC	1 cut(s)	1215
BstUI	CGCG	3 cut(s)	126, 350, 785
BstV1I	GCAGC	1 cut(s)	1074
BstXI	CCANNNNNNTGG	2 cut(s)	49, 1276
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	8 cut(s)	209, 353, 467, 578, 701, 773, 1077, 1280
BtgI	CCRYGG	2 cut(s)	881, 1269
BtgZI	GCGATG	1 cut(s)	414
BtrI	CACGTC	4 cut(s)	196, 217, 1113, 1210
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	2 cut(s)	370, 521
BtsIMutI	CAGTG	4 cut(s)	370, 521, 729, 966
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	6 cut(s)	355, 465, 586, 1224, 1282, 1286
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	3 cut(s)	57, 128, 350
Cfr10I	RCCGGY	7 cut(s)	344, 353, 769, 800, 851, 1117, 1123
Cfr13I	GGNCC	7 cut(s)	207, 292, 466, 577, 699, 878, 1076
CpoI	CGGWCCG	1 cut(s)	878
CseI	GACGC	2 cut(s)	324, 577
Csp6I	GTAC	7 cut(s)	595, 619, 874, 994, 1243, 1258, 1309
CspI	CGGWCCG	1 cut(s)	878
CviAII	CATG	3 cut(s)	328, 482, 898
CviQI	GTAC	7 cut(s)	595, 619, 874, 994, 1243, 1258, 1309
DdeI	CTNAG	3 cut(s)	681, 1160, 1289
DpnI	GATC	4 cut(s)	192, 944, 1187, 1328
DpnII	GATC	4 cut(s)	190, 942, 1185, 1326
EaeI	YGGCCR	3 cut(s)	351, 771, 1278
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	627
EclXI	CGGCCG	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	918
Eco24I	GRGCYC	2 cut(s)	629, 726
Eco31I	GGTCTC	2 cut(s)	372, 883
Eco47I	GGWCC	2 cut(s)	292, 878
Eco47III	AGCGCT	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	494
Eco72I	CACGTG	2 cut(s)	983, 1183
Eco91I	GGTNACC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	466, 1076
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	570, 1020, 1236
EcoT14I	CCWWGG	1 cut(s)	918
EcoT38I	GRGCYC	2 cut(s)	629, 726
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	3 cut(s)	331, 485, 901
FaiI	YATR	7 cut(s)	44, 329, 483, 602, 831, 899, 926
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	4 cut(s)	286, 426, 518, 1220
FatI	CATG	3 cut(s)	327, 481, 897
FauI	CCCGC	5 cut(s)	387, 577, 618, 1087, 1277
FbaI	TGATCA	1 cut(s)	1185
FblI	GTMKAC	2 cut(s)	717, 951
Fnu4HI	GCNGC	4 cut(s)	351, 576, 786, 1088
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	2 cut(s)	629, 726
Fsp4HI	GCNGC	4 cut(s)	351, 576, 786, 1088
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	3 cut(s)	56, 127, 349
GluI	GCNGC	4 cut(s)	351, 576, 786, 1088
GsaI	CCCAGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	8 cut(s)	209, 353, 467, 578, 701, 773, 1077, 1280
HgaI	GACGC	2 cut(s)	324, 577
HhaI	GCGC	3 cut(s)	57, 128, 350
Hin1I	GRCGYC	4 cut(s)	316, 588, 948, 1005
Hin1II	CATG	3 cut(s)	331, 485, 901
Hin6I	GCGC	3 cut(s)	55, 126, 348
HinP1I	GCGC	3 cut(s)	55, 126, 348
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	414, 1331, 1388
HphI	GGTGA	5 cut(s)	157, 334, 815, 841, 907
Hpy166II	GTNNAC	8 cut(s)	82, 220, 555, 718, 874, 938, 952, 964
Hpy188I	TCNGA	2 cut(s)	190, 748
Hpy188III	TCNNGA	1 cut(s)	1189
Hpy8I	GTNNAC	8 cut(s)	82, 220, 555, 718, 874, 938, 952, 964
Hpy99I	CGWCG	9 cut(s)	143, 200, 497, 518, 950, 1007, 1010, 1117, 1388
HpyAV	CCTTC	4 cut(s)	453, 1145, 1162, 1360
HpyCH4III	ACNGT	4 cut(s)	257, 871, 882, 961
HpyCH4V	TGCA	3 cut(s)	568, 604, 931
HpyF3I	CTNAG	3 cut(s)	681, 1160, 1289
Hsp92I	GRCGYC	4 cut(s)	316, 588, 948, 1005
Hsp92II	CATG	3 cut(s)	331, 485, 901
HspAI	GCGC	3 cut(s)	55, 126, 348
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	1185
Kzo9I	GATC	4 cut(s)	190, 942, 1185, 1326
LmnI	GCTCC	6 cut(s)	52, 99, 120, 380, 632, 1025
Lsp1109I	GCAGC	1 cut(s)	1074
LweI	GCATC	1 cut(s)	1182
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	340, 983, 1231
MalI	GATC	4 cut(s)	192, 944, 1187, 1328
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	4 cut(s)	190, 942, 1185, 1326
MboII	GAAGA	4 cut(s)	112, 154, 487, 1186
MhlI	GDGCHC	3 cut(s)	629, 726, 1215
MlsI	TGGCCA	1 cut(s)	1280
MluCI	AATT	1 cut(s)	1092
MluNI	TGGCCA	1 cut(s)	1280
MlyI	GAGTC	2 cut(s)	408, 1340
MmeI	TCCRAC	2 cut(s)	654, 1011
Mox20I	TGGCCA	1 cut(s)	1280
MroNI	GCCGGC	1 cut(s)	353
MroXI	GAANNNNTTC	2 cut(s)	536, 1155
MscI	TGGCCA	1 cut(s)	1280
MseI	TTAA	2 cut(s)	386, 857
MslI	CAYNNNNRTG	2 cut(s)	332, 1227
Msp20I	TGGCCA	1 cut(s)	1280
MspA1I	CMGCKG	3 cut(s)	1087, 1284, 1359
MspCI	CTTAAG	1 cut(s)	856
MspR9I	CCNGG	4 cut(s)	572, 640, 1022, 1238
MvaI	CCWGG	3 cut(s)	572, 1022, 1238
MvnI	CGCG	3 cut(s)	126, 350, 785
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	4 cut(s)	190, 942, 1185, 1326
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	331, 485, 901
NlaIV	GGNNCC	5 cut(s)	208, 549, 1019, 1078, 1122
NmeAIII	GCCGAG	2 cut(s)	1083, 1221
NmuCI	GTSAC	3 cut(s)	340, 983, 1231
NspI	RCATGY	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	536, 1155
PfeI	GAWTC	1 cut(s)	1388
Pfl23II	CGTACG	1 cut(s)	618
PflFI	GACNNNGTC	1 cut(s)	1004
PflMI	CCANNNNNTGG	1 cut(s)	696
PkrI	GCNGC	4 cut(s)	352, 577, 787, 1089
Ple19I	CGATCG	1 cut(s)	945
PleI	GAGTC	2 cut(s)	408, 1339
PmaCI	CACGTG	2 cut(s)	983, 1183
PmlI	CACGTG	2 cut(s)	983, 1183
PpsI	GAGTC	2 cut(s)	408, 1339
Ppu21I	YACGTR	4 cut(s)	622, 983, 993, 1183
Psp124BI	GAGCTC	1 cut(s)	629
Psp6I	CCWGG	3 cut(s)	570, 1020, 1236
PspCI	CACGTG	2 cut(s)	983, 1183
PspEI	GGTNACC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	1083
PspGI	CCWGG	3 cut(s)	570, 1020, 1236
PspLI	CGTACG	1 cut(s)	618
PspN4I	GGNNCC	5 cut(s)	208, 549, 1019, 1078, 1122
PspPI	GGNCC	7 cut(s)	207, 292, 466, 577, 699, 878, 1076
PstI	CTGCAG	1 cut(s)	933
PstNI	CAGNNNCTG	1 cut(s)	469
PsyI	GACNNNGTC	1 cut(s)	1004
PvuI	CGATCG	1 cut(s)	945
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	7 cut(s)	596, 620, 875, 995, 1244, 1259, 1310
RsaNI	GTAC	7 cut(s)	595, 619, 874, 994, 1243, 1258, 1309
RseI	CAYNNNNRTG	2 cut(s)	332, 1227
Rsr2I	CGGWCCG	1 cut(s)	878
RsrII	CGGWCCG	1 cut(s)	878
SacI	GAGCTC	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	386, 857
SatI	GCNGC	4 cut(s)	351, 576, 786, 1088
Sau3AI	GATC	4 cut(s)	190, 942, 1185, 1326
Sau96I	GGNCC	7 cut(s)	207, 292, 466, 577, 699, 878, 1076
SchI	GAGTC	2 cut(s)	408, 1340
ScrFI	CCNGG	4 cut(s)	572, 640, 1022, 1238
SduI	GDGCHC	3 cut(s)	629, 726, 1215
SfaNI	GCATC	1 cut(s)	1182
SfcI	CTRYAG	1 cut(s)	929
SgrAI	CRCCGGYG	2 cut(s)	344, 1117
SinI	GGWCC	2 cut(s)	292, 878
SmiMI	CAYNNNNRTG	2 cut(s)	332, 1227
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
Sse9I	AATT	1 cut(s)	1092
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	629
StyD4I	CCNGG	4 cut(s)	570, 638, 1020, 1236
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	4 cut(s)	257, 871, 882, 961
TaqI	TCGA	8 cut(s)	417, 458, 540, 657, 945, 1142, 1329, 1334
TaqII	GACCGA	1 cut(s)	703
TasI	AATT	1 cut(s)	1092
TauI	GCSGC	3 cut(s)	353, 578, 788
TfiI	GAWTC	1 cut(s)	1388
Tru1I	TTAA	2 cut(s)	386, 857
Tru9I	TTAA	2 cut(s)	386, 857
TscAI	CASTG	4 cut(s)	377, 528, 736, 966
TseFI	GTSAC	3 cut(s)	340, 983, 1231
TseI	GCWGC	1 cut(s)	1087
Tsp45I	GTSAC	3 cut(s)	340, 983, 1231
TspGWI	ACGGA	2 cut(s)	891, 1286
TspRI	CASTG	4 cut(s)	377, 528, 736, 966
Tth111I	GACNNNGTC	1 cut(s)	1004
Van91I	CCANNNNNTGG	1 cut(s)	696
Vha464I	CTTAAG	1 cut(s)	856
VpaK11BI	GGWCC	2 cut(s)	292, 878
XapI	RAATTY	1 cut(s)	1092
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1234, 1273
XmiI	GTMKAC	2 cut(s)	717, 951
XmnI	GAANNNNTTC	2 cut(s)	536, 1155
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	2 cut(s)	949, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.