Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016121

Physical Location & Seq

Genomic Coordinates Forward (+)

19298931 .. 19299800

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGTCTATGGAATCTCAAAAATCTCCTGTTCCTGAATCTGTCATTCAATTCTCTTAGTGGAGACTTACCTACAAGCATGAGAAAGACTAAGGTTCTTCAAATCATTGCTTTATCCTCAAATCAAATCAGTGGAAACATTCCAACTGTTATTGGAGAATTTCAAAGCTTGAGCTCTTTATATTTGTCAAACAACATGTTTGTAGGATCTGTTCCCCAAAGTTTTGGTGATCTAAAAGGATTGGAACTTTTGGACCTATCATACAACAACTTGTCGGGCACGATACCTAAGTCTCTAGAAATGCTCAAATACCTCAAGTATTTGAACTTGTCTTATAACAAGCTCTTGGGAGAAATTCCTTCTGAGGGACCTTTTGTCAACTTCAGTGCACAATCATTCTTGGGAAATATGGCACTTTGTCAGAGATCACCAAACTTTGGAGTCTCACCCTGCAGGAATCCTAGGGCTCAAAAATCAAGGAAGGCTTCTAGTTTGCTCACATATATTTTTCCAGCTATTATATCAATAGCTATCCTCATAAGTCTCATTTCTTGGTGGAAAATTTGTCACAAAAGAAAAGCAACCATTCCAAGGCCAACTGAACAGTTAATAGCACCAGAGCAGATATTGATATCATATCATGAACTCTGTTTGGCTACTAATAACTTCTGTGAAAGCAACTTACTGGGAGTGGGGAGTTTCGGCTCTGTGTACAAGGGTCTGCTTTCTGATGGGGTAATTGTTGCTGTCAAGGTTCTAAATTTAACAATGGAGGGTGCCTTCAAAAGTTTTGATGCAGAGTGTAAGGTGTGGCGGACAATCCGGCACAGAAATGTTATCAAGGTCATAAGTCATAACTACATGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016051 GO:0016053 GO:0019586 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032787 GO:0033481 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046394 GO:0050829 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0097708 GO:0098542 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

289

Amino Acids

32.16

Weight (kDa)

9.49

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 114	5.3e-09	Leucine-rich repeat region
LRR_8	PF13855	56 - 115	3.2e-11	Leucine rich repeat
Pkinase	PF00069	226 - 284	1.6e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	227 - 283	6.9e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23820
fragaria_vesca	FvH4_4g13320
malus_domestica	MD05G1230600.v1.1
prunus_persica	Prupe.1G164800_v2.0.a1
pyrus_communis	pycom04g01330
rosa_chinensis	RchiOBHm_Chr4g0413621
rosa_laevigata	RLG00000008205
rosa_multiflora	Rmu_sc0008583.1_g000001 Rmu_sc0026643.1_g000001
rosa_rugosa	Rorug04G0121700
rosa_samantha	Rh4AG181200 Rh4BG180400 Rh4CG192400 Rh4DG176600
rosa_wichuraiana	Rw4G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	776
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	1 cut(s)	814
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	4 cut(s)	158, 354, 561, 760
AcuI	CTGAAG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	3 cut(s)	365, 437, 591
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	49, 101, 164, 325, 784
AhdI	GACNNNNNGTC	1 cut(s)	374
AluBI	AGCT	5 cut(s)	168, 174, 343, 515, 530
AluI	AGCT	5 cut(s)	168, 174, 343, 515, 530
Alw21I	GWGCWC	2 cut(s)	176, 391
Alw26I	GTCTC	4 cut(s)	57, 297, 448, 548
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	593
ApaLI	GTGCAC	1 cut(s)	387
ApoI	RAATTY	4 cut(s)	158, 354, 561, 760
AspA2I	CCTAGG	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	253, 368
AsuHPI	GGTGA	3 cut(s)	239, 420, 438
AvaII	GGWCC	2 cut(s)	253, 368
AvrII	CCTAGG	1 cut(s)	461
BaeGI	GKGCMC	2 cut(s)	281, 391
BaeI	ACNNNNGTAYC	2 cut(s)	275, 308
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	2 cut(s)	176, 469
Bbv12I	GWGCWC	2 cut(s)	176, 391
BccI	CCATC	1 cut(s)	725
BcoDI	GTCTC	4 cut(s)	57, 297, 448, 548
BfaI	CTAG	4 cut(s)	296, 462, 489, 868
BfmI	CTRYAG	1 cut(s)	451
BlnI	CCTAGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	253, 368
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	253, 368
BmiI	GGNNCC	2 cut(s)	369, 778
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	695
BpuEI	CTTGAG	2 cut(s)	190, 299
BsaJI	CCNNGG	2 cut(s)	461, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 437, 591
Bse1I	ACTGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	461, 590
BseLI	CCNNNNNNNGG	3 cut(s)	365, 437, 591
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	690
BseSI	GKGCMC	2 cut(s)	281, 391
BshFI	GGCC	1 cut(s)	595
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	2 cut(s)	176, 391
BsiSI	CCGG	1 cut(s)	823
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	365, 437, 591
BsmAI	GTCTC	4 cut(s)	57, 297, 448, 548
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	595
Bsp1286I	GDGCHC	4 cut(s)	176, 281, 391, 469
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	206, 229, 425
BspACI	CCGC	1 cut(s)	814
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	369, 778
BspMAI	CTGCAG	1 cut(s)	455
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	2 cut(s)	461, 590
BssMI	GATC	3 cut(s)	206, 229, 425
BssT1I	CCWWGG	2 cut(s)	461, 590
Bst4CI	ACNGT	2 cut(s)	148, 606
BstAUI	TGTACA	1 cut(s)	711
BstDEI	CTNAG	4 cut(s)	56, 90, 288, 363
BstKTI	GATC	3 cut(s)	209, 232, 428
BstMAI	GTCTC	4 cut(s)	57, 297, 448, 548
BstMBI	GATC	3 cut(s)	206, 229, 425
BstNSI	RCATGY	2 cut(s)	199, 865
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	2 cut(s)	281, 391
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	136, 391
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	2 cut(s)	253, 368
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	4 cut(s)	79, 196, 641, 862
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	4 cut(s)	56, 90, 288, 363
DpnI	GATC	3 cut(s)	208, 231, 427
DpnII	GATC	3 cut(s)	206, 229, 425
DriI	GACNNNNNGTC	1 cut(s)	374
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	461, 590
Eco24I	GRGCYC	2 cut(s)	176, 469
Eco32I	GATATC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	253, 368
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	633
EcoT14I	CCWWGG	2 cut(s)	461, 590
EcoT38I	GRGCYC	2 cut(s)	176, 469
ErhI	CCWWGG	2 cut(s)	461, 590
FaeI	CATG	4 cut(s)	82, 199, 644, 865
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	4 cut(s)	78, 195, 640, 861
FriOI	GRGCYC	2 cut(s)	176, 469
FspBI	CTAG	4 cut(s)	296, 462, 489, 868
HaeIII	GGCC	1 cut(s)	595
HapII	CCGG	1 cut(s)	823
Hin1II	CATG	4 cut(s)	82, 199, 644, 865
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	5 cut(s)	4, 13, 37, 441, 457
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	3 cut(s)	239, 420, 438
Hpy166II	GTNNAC	3 cut(s)	379, 389, 712
Hpy188I	TCNGA	3 cut(s)	364, 423, 730
Hpy188III	TCNNGA	3 cut(s)	34, 296, 641
Hpy8I	GTNNAC	3 cut(s)	379, 389, 712
HpyAV	CCTTC	3 cut(s)	369, 475, 790
HpyCH4III	ACNGT	2 cut(s)	148, 606
HpyCH4V	TGCA	3 cut(s)	389, 453, 797
HpyF3I	CTNAG	4 cut(s)	56, 90, 288, 363
Hsp92II	CATG	4 cut(s)	82, 199, 644, 865
Kzo9I	GATC	3 cut(s)	206, 229, 425
LpnPI	CCDG	8 cut(s)	41, 47, 439, 463, 525, 630, 671, 836
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	4 cut(s)	296, 462, 489, 868
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	3 cut(s)	208, 231, 427
MboI	GATC	3 cut(s)	206, 229, 425
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	4 cut(s)	176, 281, 391, 469
MluCI	AATT	6 cut(s)	49, 158, 354, 561, 738, 760
MlyI	GAGTC	2 cut(s)	13, 450
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	127, 323, 358, 545, 766
MseI	TTAA	2 cut(s)	608, 764
MslI	CAYNNNNRTG	1 cut(s)	831
MspI	CCGG	1 cut(s)	823
NdeII	GATC	3 cut(s)	206, 229, 425
NlaIII	CATG	4 cut(s)	82, 199, 644, 865
NlaIV	GGNNCC	2 cut(s)	369, 778
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	2 cut(s)	199, 865
PagI	TCATGA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	13, 37, 457
PflMI	CCANNNNNTGG	1 cut(s)	437
PleI	GAGTC	2 cut(s)	12, 449
PpsI	GAGTC	2 cut(s)	12, 449
PpuMI	RGGWCCY	1 cut(s)	368
PscI	ACATGT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	369, 778
PspPI	GGNCC	2 cut(s)	253, 368
PspPPI	RGGWCCY	1 cut(s)	368
PsrI	GAACNNNNNNTAC	2 cut(s)	195, 227
PstI	CTGCAG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	831
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	608, 764
Sau3AI	GATC	3 cut(s)	206, 229, 425
Sau96I	GGNCC	2 cut(s)	253, 368
SbfI	CCTGCAGG	1 cut(s)	455
SchI	GAGTC	2 cut(s)	13, 450
SdaI	CCTGCAGG	1 cut(s)	455
SduI	GDGCHC	4 cut(s)	176, 281, 391, 469
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	2 cut(s)	253, 368
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	169, 314
SmoI	CTYRAG	2 cut(s)	169, 314
Sse8387I	CCTGCAGG	1 cut(s)	455
Sse9I	AATT	6 cut(s)	49, 158, 354, 561, 738, 760
SsiI	CCGC	1 cut(s)	814
SspMI	CTAG	4 cut(s)	296, 462, 489, 868
SstI	GAGCTC	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	461, 590
TaaI	ACNGT	2 cut(s)	148, 606
TasI	AATT	6 cut(s)	49, 158, 354, 561, 738, 760
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	3 cut(s)	13, 37, 457
Tru1I	TTAA	2 cut(s)	608, 764
Tru9I	TTAA	2 cut(s)	608, 764
TscAI	CASTG	2 cut(s)	136, 391
TseFI	GTSAC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	1 cut(s)	657
TspRI	CASTG	2 cut(s)	136, 391
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	253, 368
XapI	RAATTY	4 cut(s)	158, 354, 561, 760
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	2 cut(s)	199, 865
XmaJI	CCTAGG	1 cut(s)	461
XspI	CTAG	4 cut(s)	296, 462, 489, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.