pycom04g02240

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
1991652 .. 1991840
189 bp
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UTR
Exon/CDS
Intron
pycom04g02240.1

Sequence Viewer

Length: 189 bp
ATGTCAAGTTTTAGTCCAATAGCCCAAAAGCCCAAAATTATTTTGGGATTTCCGAAAATTTGGTTTGGGATCGGTCTTGAAATTGGGATTCCCGAAAACTTCGGTTTAGGAATTGGGACAAGGGTTTCGGTTCGGTATCCCATACCGAACCAGCCCTTTCACCTAGTGTTCCGGAGCCAAAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.96

Weight (kDa)

10.55

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024467)

Species Orthologous Gene IDs
malus_domestica MD05G1215700.v1.1
pyrus_communis pycom01g01920 pycom04g02240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 171
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 80
AlwI GGATC 1 cut(s) 77
Aor13HI TCCGGA 1 cut(s) 171
ApoI RAATTY 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AsuHPI GGTGA 1 cut(s) 152
BciVI GTATCC 1 cut(s) 147
BfaI CTAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 171
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 130
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 77
BssMI GATC 1 cut(s) 69
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 184
CviJI RGCY 4 cut(s) 23, 31, 154, 177
CviKI_1 RGCY 4 cut(s) 23, 31, 154, 177
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DraIII CACNNNGTG 1 cut(s) 166
FaiI YATR 1 cut(s) 143
FaqI GGGAC 1 cut(s) 130
FspBI CTAG 1 cut(s) 164
HapII CCGG 1 cut(s) 172
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 172
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 3 cut(s) 77, 92, 172
Kpn2I TCCGGA 1 cut(s) 171
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 2 cut(s) 164, 185
MaeI CTAG 1 cut(s) 164
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MluCI AATT 4 cut(s) 36, 57, 81, 111
MroI TCCGGA 1 cut(s) 171
MspI CCGG 1 cut(s) 172
NdeII GATC 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 69
SetI ASST 1 cut(s) 165
SgeI CNNG 7 cut(s) 18, 89, 104, 132, 163, 176, 184
Sse9I AATT 4 cut(s) 36, 57, 81, 111
SspMI CTAG 1 cut(s) 164
TaqII GACCGA 1 cut(s) 62
TasI AATT 4 cut(s) 36, 57, 81, 111
TfiI GAWTC 1 cut(s) 88
XapI RAATTY 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.