pycom04g02950

High mobility group B protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
2707152 .. 2708376
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGTACCATGTGCAGAGGATTTGGGAGGGTGCAGTACCAAGTGAAGAATTACACCTTGAGAAGGTAGTTGTAGAGAAGAAATTGAGGGAAGTGGGAGGTGTTTTCATGTTCTTCCCAACAACAACAAGCGCTTTGTTTGTGCTGAGGAAACACTACTCAACCCTTTTCTACCGTTACGAACAGGTGAAGGCTTTGTGTGATTGGACAGACTTTGCTTTGCATGATTGGGAAGATAATGTGAAGGCTTTGTTTCGCCAAGGCCAGGTAATAATCTTTAATTGGCAAGAATTCATAAAACCTTCTGGTCGCTGTTTATGA

Protein Analysis

106

Amino Acids

12.54

Weight (kDa)

6.9

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022386)

Species Orthologous Gene IDs
malus_domestica MD01G1212400.v1.1 MD05G1032100.v1.1 MD05G1108200.v1.1
pyrus_communis pycom04g02950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 2 cut(s) 5, 36
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 61, 262
AjnI CCWGG 1 cut(s) 261
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 1 cut(s) 259
ApoI RAATTY 1 cut(s) 287
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 262
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 61, 262
BseMII CTCAG 1 cut(s) 134
BsgI GTGCAG 2 cut(s) 32, 51
BshFI GGCC 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 61, 262
BsnI GGCC 1 cut(s) 261
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 143
BstENI CCTNNNNNAGG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 261
CfoI GCGC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 4, 35
CviAII CATG 3 cut(s) 8, 106, 221
CviJI RGCY 3 cut(s) 191, 245, 261
CviKI_1 RGCY 3 cut(s) 191, 245, 261
CviQI GTAC 2 cut(s) 4, 35
DdeI CTNAG 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 256
Eco47III AGCGCT 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 3 cut(s) 11, 109, 224
FaiI YATR 5 cut(s) 9, 107, 222, 293, 316
FatI CATG 3 cut(s) 7, 105, 220
GlaI GCGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 261
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 11, 109, 224
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HphI GGTGA 1 cut(s) 196
HpyAV CCTTC 4 cut(s) 55, 181, 235, 309
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 13, 32, 220
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 3 cut(s) 11, 109, 224
HspAI GCGC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 167, 248, 275, 288
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 4 cut(s) 56, 88, 103, 242
MluCI AATT 4 cut(s) 47, 80, 277, 287
MnlI CCTC 5 cut(s) 9, 19, 78, 89, 138
MseI TTAA 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
NlaIII CATG 3 cut(s) 11, 109, 224
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
RsaI GTAC 2 cut(s) 5, 36
RsaNI GTAC 2 cut(s) 4, 35
SaqAI TTAA 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 263
SetI ASST 6 cut(s) 57, 66, 100, 186, 267, 301
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 47, 80, 277, 287
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 173
TasI AATT 4 cut(s) 47, 80, 277, 287
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 94, 280
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.