Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0024630

Physical Location & Seq

Genomic Coordinates Reverse (-)

3030630 .. 3031800

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCTGGCAGCAGAGTACTAAAATGGACATATGCTTATGGGTACTACCTGCCAGAGCGTGAGCAAGCAAAGAGGCAGTTTTTTGAGTACTTGCAAGGTATTAACTGTGTATATCTGCAGGAACTAGTTAGGAGTTGTTTTATAAGTTTTCTGAAATATTCAATTCTGCTTTTGTCTTCAGGTGAGGCAGAGTCTGCTTTGGAAAAGCTTCATCAGTGTGCAGAGAAGGAGCTACTGCAATTCCTTAGTGCAGAAGGCCCATCGAAAGAATTCGTTGATTTCCGTACAAAGCTAGCTGGACTTACCGGTTTGCGGTGGGTCAACAAGCTCAAAAAACGTAGGGAGCAGCAAAGCAAAAGGTGGAAGGGGAAAGGTAACCGGTCGAGGTGGTGGGTCCAGCAGAAATGTATAGCACGGATATTTGGACCAGTGATCAGTATCGTACAACAATTCCACGCCTGCCACATGTGCCATCACCGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

162

Amino Acids

19.11

Weight (kDa)

9.77

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024630)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03350 pycom04g03400 pycom15g02970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	57
AciI	CCGC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	5 cut(s)	18, 44, 89, 286, 444
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	465
AgeI	ACCGGT	2 cut(s)	305, 378
AgsI	TTSAA	1 cut(s)	162
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	5 cut(s)	208, 232, 292, 296, 328
AluI	AGCT	5 cut(s)	208, 232, 292, 296, 328
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	9, 346
ApoI	RAATTY	1 cut(s)	269
AsiGI	ACCGGT	2 cut(s)	305, 378
Asp700I	GAANNNNTTC	2 cut(s)	207, 269
AspS9I	GGNCC	3 cut(s)	257, 394, 425
AsuHPI	GGTGA	2 cut(s)	194, 467
AsuNHI	GCTAGC	1 cut(s)	292
AvaII	GGWCC	2 cut(s)	394, 425
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	21, 358
BccI	CCATC	2 cut(s)	268, 480
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	432
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	2 cut(s)	125, 293
BfmI	CTRYAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	2 cut(s)	10, 347
BlsI	GCNGC	2 cut(s)	11, 348
BmcAI	AGTACT	2 cut(s)	18, 89
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	394, 425
BmgT120I	GGNCC	3 cut(s)	257, 394, 425
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	6
BmtI	GCTAGC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	437
BsaWI	WCCGGW	2 cut(s)	305, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	2 cut(s)	305, 378
Bse1I	ACTGG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	21, 358
BsgI	GTGCAG	2 cut(s)	240, 270
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	258
BshTI	ACCGGT	2 cut(s)	305, 378
BsiEI	CGRYCG	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	306, 379
BslI	CCNNNNNNNGG	1 cut(s)	312
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	432
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	57
BspOI	GCTAGC	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	305, 378
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	2 cut(s)	305, 378
BssMI	GATC	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	107, 479
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	66, 294, 460
BstDEI	CTNAG	1 cut(s)	245
BstEII	GGTNACC	1 cut(s)	374
BstKTI	GATC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	432
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 468
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	469
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	21, 358
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	221, 435
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	66, 294, 460
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr10I	RCCGGY	2 cut(s)	305, 378
Cfr13I	GGNCC	3 cut(s)	257, 394, 425
Csp6I	GTAC	5 cut(s)	17, 43, 88, 285, 443
CspAI	ACCGGT	2 cut(s)	305, 378
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	6 cut(s)	208, 232, 258, 292, 296, 328
CviKI_1	RGCY	6 cut(s)	208, 232, 258, 292, 296, 328
CviQI	GTAC	5 cut(s)	17, 43, 88, 285, 443
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	394, 425
Eco57I	CTGAAG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	1 cut(s)	469
FaiI	YATR	7 cut(s)	31, 33, 39, 112, 143, 410, 467
FatI	CATG	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	10, 347
Fsp4HI	GCNGC	2 cut(s)	10, 347
FspBI	CTAG	2 cut(s)	125, 293
GluI	GCNGC	2 cut(s)	10, 347
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	306, 379
Hin1II	CATG	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	306, 379
HphI	GGTGA	2 cut(s)	194, 467
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	220, 248, 358
HpyCH4III	ACNGT	2 cut(s)	107, 479
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	5 cut(s)	94, 118, 221, 238, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 468
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	229, 343
Lsp1109I	GCAGC	2 cut(s)	21, 358
MaeI	CTAG	2 cut(s)	125, 293
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	4 cut(s)	162, 239, 269, 449
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	66, 178, 378
MroXI	GAANNNNTTC	2 cut(s)	207, 269
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	2 cut(s)	306, 379
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	194, 468
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	432
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PdmI	GAANNNNTTC	2 cut(s)	207, 269
PinAI	ACCGGT	2 cut(s)	305, 378
PkrI	GCNGC	2 cut(s)	11, 348
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	3 cut(s)	257, 394, 425
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	194
RsaI	GTAC	5 cut(s)	18, 44, 89, 286, 444
RsaNI	GTAC	5 cut(s)	17, 43, 88, 285, 443
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	10, 347
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	3 cut(s)	257, 394, 425
ScaI	AGTACT	2 cut(s)	18, 89
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	394, 425
SmiMI	CAYNNNNRTG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	4 cut(s)	162, 239, 269, 449
SsiI	CCGC	1 cut(s)	313
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	2 cut(s)	125, 293
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	107, 479
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	263, 383
TasI	AATT	4 cut(s)	162, 239, 269, 449
TatI	WGTACW	2 cut(s)	16, 87
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	221, 435
TseI	GCWGC	2 cut(s)	9, 346
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	2 cut(s)	272, 430
TspRI	CASTG	2 cut(s)	221, 435
VpaK11BI	GGWCC	2 cut(s)	394, 425
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	207, 269
XspI	CTAG	2 cut(s)	125, 293
ZrmI	AGTACT	2 cut(s)	18, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.