Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0024630

Physical Location & Seq

Genomic Coordinates Reverse (-)

3049512 .. 3049962

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGAAACTTAGTGACATACAGCGCGAGCCTGAGTCTCAGCTCAAGTTCATAACCGATGCATGGGAGCAGATTGTTGAATGTAGGAGAGTATTGAAATGGACATATGCTTATGGGTACTACCTGCCAGAGTGTGAGCAAGCGAAGAGGCAGTTTTTTGAGTACTTGCAAGGTATGAACTGTGTATATCTGCAGGAACTAGTTAGGAGTTGTTTTTTAAGTTTTCTGAAATATGCAGTTCGGCTTTTGTCTTCAGGTGAGGCAGAGTCTGCTTTGGAAAGGCTTCATCAGTGTGCAGAGAAGGAGCTACTGCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

107

Amino Acids

12.65

Weight (kDa)

5.22

Isoelectric Point (pI)

63.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024630)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03350 pycom04g03400 pycom15g02970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccII	CGCG	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	119, 164
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	80, 97
AhlI	ACTAGT	1 cut(s)	199
AluBI	AGCT	3 cut(s)	43, 307, 318
AluI	AGCT	3 cut(s)	43, 307, 318
Alw26I	GTCTC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	42
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	2 cut(s)	200, 319
BfmI	CTRYAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	132
BmcAI	AGTACT	1 cut(s)	164
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	24, 53
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	25, 52
BspFNI	CGCG	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	29, 141
BstDEI	CTNAG	3 cut(s)	11, 33, 39
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	29, 141
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	118, 163
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	6 cut(s)	31, 43, 244, 283, 307, 318
CviKI_1	RGCY	6 cut(s)	31, 43, 244, 283, 307, 318
CviQI	GTAC	2 cut(s)	118, 163
DdeI	CTNAG	3 cut(s)	11, 33, 39
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	64
FaeI	CATG	1 cut(s)	66
FaiI	YATR	9 cut(s)	20, 53, 64, 106, 108, 114, 176, 187, 234
FatI	CATG	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	106
FspBI	CTAG	2 cut(s)	200, 319
GlaI	GCGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	35, 266
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	6 cut(s)	62, 169, 193, 236, 296, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	11, 33, 39
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	67, 304
LpnPI	CCDG	5 cut(s)	45, 137, 141, 179, 240
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	200, 319
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	157, 243
MlyI	GAGTC	2 cut(s)	44, 275
MnlI	CCTC	2 cut(s)	141, 253
Mph1103I	ATGCAT	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	106
NlaIII	CATG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	282
PleI	GAGTC	2 cut(s)	43, 274
PpsI	GAGTC	2 cut(s)	43, 274
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	119, 164
RsaNI	GTAC	2 cut(s)	118, 163
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	218
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	2 cut(s)	44, 275
SetI	ASST	6 cut(s)	45, 126, 175, 259, 309, 320
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	200, 319
TaaI	ACNGT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	40, 191, 275
TspRI	CASTG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	200, 319
ZrmI	AGTACT	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.