pycom15g02970

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0024630
Physical Location & Seq
Forward (+)
1835838 .. 1836248
411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02970.1

Sequence Viewer

Length: 411 bp
ATGCTAAATCCAATACTGTTGGTTTTGTTTACGGTATACAACGATATATTTATACGAAGGGGTGAGGGATTTTGGCTTGGCCGCACAAGTATGAACAACAACAATTCTTATCAATCTTCTCGCATGACGAATCCCACATTGATGAACGATAGGCAAACAATCAATCTTCAAAGCAAAAAGCAATCGAGGATTTACATAACGTGCAAAGCGTGCAGATCACGAAACTTGCCGGCACACAATGCCAGTCAAGATTGTATGCTCAGGTTCATTATAGATGTGTGGGCACGGACCGTTGAGTGTAGGCAGGTATTGCGATGGACTTATGCGTACGGCTACTTCATCCCCGAAAATGGGCGTTTGAACTCGAAGGTGCCGGTTATTCGAGCATTTGCAAGGCCACGCAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RanBP

Protein Analysis

137

Amino Acids

16.04

Weight (kDa)

10.69

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024630)

Species Orthologous Gene IDs
pyrus_communis pycom04g03350 pycom04g03400 pycom15g02970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 79
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 350, 351
AgsI TTSAA 2 cut(s) 170, 361
AoxI GGCC 2 cut(s) 79, 395
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 370
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 351
Bse118I RCCGGY 2 cut(s) 229, 373
Bse1I ACTGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 350, 351
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 2 cut(s) 81, 397
BshNI GGYRCC 1 cut(s) 370
BsiSI CCGG 2 cut(s) 230, 374
BsiWI CGTACG 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 350, 351
BsnI GGCC 2 cut(s) 81, 397
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 81, 397
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 370
BsrFI RCCGGY 2 cut(s) 229, 373
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 2 cut(s) 229, 373
BssMI GATC 1 cut(s) 215
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst4CI ACNGT 3 cut(s) 18, 34, 292
BstAPI GCANNNNNTGC 3 cut(s) 210, 239, 310
BstC8I GCNNGC 2 cut(s) 211, 231
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 3 cut(s) 210, 239, 310
BstSLI GKGCMC 1 cut(s) 286
BstZ17I GTATAC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 81, 397
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 211, 231
Cfr10I RCCGGY 2 cut(s) 229, 373
Cfr13I GGNCC 1 cut(s) 288
CpoI CGGWCCG 1 cut(s) 288
Csp6I GTAC 1 cut(s) 328
CspI CGGWCCG 1 cut(s) 288
CviAII CATG 1 cut(s) 124
CviJI RGCY 4 cut(s) 76, 81, 333, 397
CviKI_1 RGCY 4 cut(s) 76, 81, 333, 397
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 288
FaeI CATG 1 cut(s) 127
FaiI YATR 9 cut(s) 37, 47, 53, 92, 125, 197, 257, 272, 324
FatI CATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HaeIII GGCC 2 cut(s) 81, 397
HapII CCGG 2 cut(s) 230, 374
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 230, 374
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 30, 37
Hpy188III TCNNGA 2 cut(s) 219, 248
Hpy8I GTNNAC 2 cut(s) 30, 37
HpyAV CCTTC 2 cut(s) 51, 361
HpyCH4III ACNGT 3 cut(s) 18, 34, 292
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 204, 213, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 239, 310
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 1 cut(s) 127
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 243, 247, 256, 290, 387
MaeII ACGT 1 cut(s) 200
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 108, 158
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 103
MnlI CCTC 2 cut(s) 58, 180
MroNI GCCGGC 1 cut(s) 229
MslI CAYNNNNRTG 2 cut(s) 89, 140
MspI CCGG 2 cut(s) 230, 374
MwoI GCNNNNNNNGC 3 cut(s) 210, 239, 310
NaeI GCCGGC 1 cut(s) 231
NdeII GATC 1 cut(s) 215
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PdiI GCCGGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 327
PkrI GCNGC 1 cut(s) 83
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 2 cut(s) 89, 140
Rsr2I CGGWCCG 1 cut(s) 288
RsrII CGGWCCG 1 cut(s) 288
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 203, 266, 309, 372
SinI GGWCC 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 89, 140
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 82
TaaI ACNGT 3 cut(s) 18, 34, 292
TaiI ACGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 185, 365, 382
TasI AATT 1 cut(s) 103
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 130
TspDTI ATGAA 4 cut(s) 107, 158, 256, 328
TspGWI ACGGA 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.