Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0022402

Physical Location & Seq

Genomic Coordinates Reverse (-)

16279709 .. 16280406

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGTGTTCTTCATGGGGCTTTACCTCATAGCACTTGGAACTGGATGCATAAAGCTTGTGTCTCATCATTTGGAGCATACCAATTTGATGACTCCGATGAGGCCGAAAAAAATAACCAAGAGTTCCTTCTTCAACTGGTTCTATTTCTCAATCAACATTGGTGCCCTGGTGGCATCTTCTGTGCTTGTTTGGATACAAACAAACGTTGGGTGGAGCTGAGGCTTCGGCATCCCAGCATGGCACTTGCTGTTGTGAGCTTCTTTTCCGGCACTCAGTTGTACAAAAACAAGATTCCCGGTGGTAGTCCCCTCACTCGCATTTGCCAGGTGCTTGTTGCATCCTTCAGGGAGTTTCGAGTTCGAGTGCCTTGTGACAAGTCGCTCTTGTATGAGACTGCCGATGAGGAACCTGCCGTTAAAGGAAGCCAAAAGCTTGATCACACTAAGCAGCTAAGTTTCTTGGACAAGGCGGCGGTAGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

162

Amino Acids

18.2

Weight (kDa)

6.99

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	79 - 156	1.2e-06	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0022402)

Species	Orthologous Gene IDs
malus_domestica	MD04G1147600.v1.1
pyrus_communis	pycom04g13320
rosa_samantha	Rh5AG448900 Rh5AG449000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	2 cut(s)	470, 473
AclI	AACGTT	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	2 cut(s)	166, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	5 cut(s)	56, 217, 258, 433, 451
AluI	AGCT	5 cut(s)	56, 217, 258, 433, 451
Alw26I	GTCTC	3 cut(s)	67, 386, 473
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	460
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	2 cut(s)	168, 326
BciVI	GTATCC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	67, 386, 473
BfuAI	ACCTGC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	187
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	449, 471
BlsI	GCNGC	2 cut(s)	450, 472
Bme1390I	CCNGG	3 cut(s)	168, 297, 326
BmiI	GGNNCC	2 cut(s)	164, 408
BmrFI	CCNGG	3 cut(s)	168, 297, 326
BmsI	GCATC	4 cut(s)	36, 183, 238, 347
Bpu10I	CCTNAGC	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	47, 141
BseBI	CCWGG	2 cut(s)	168, 326
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	51, 229, 338
BseMII	CTCAG	2 cut(s)	209, 287
BseNI	ACTGG	2 cut(s)	47, 141
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	460
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	267, 297
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	3 cut(s)	67, 386, 473
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	470, 473
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	210, 286
BspLI	GGNNCC	2 cut(s)	164, 408
BspMI	ACCTGC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	47, 141
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	168, 326
BstAUI	TGTACA	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	218, 273, 444, 452
BstF5I	GGATG	3 cut(s)	51, 229, 338
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	3 cut(s)	67, 386, 473
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	168, 326
BstSCI	CCNGG	3 cut(s)	166, 295, 324
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	51, 229, 338
BveI	ACCTGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	14, 238
CviJI	RGCY	9 cut(s)	20, 56, 104, 217, 223, 258, 426, 433, 451
CviKI_1	RGCY	9 cut(s)	20, 56, 104, 217, 223, 258, 426, 433, 451
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	218, 273, 444, 452
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	166, 324
EcoT22I	ATGCAT	1 cut(s)	51
FaeI	CATG	2 cut(s)	17, 241
FaiI	YATR	7 cut(s)	15, 30, 51, 79, 239, 390, 484
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 368, 400
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	13, 237
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	449, 471
FokI	GGATG	3 cut(s)	58, 216, 325
Fsp4HI	GCNGC	2 cut(s)	449, 471
GluI	GCNGC	2 cut(s)	449, 471
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	267, 297
Hin1II	CATG	2 cut(s)	17, 241
HindIII	AAGCTT	2 cut(s)	54, 431
HinfI	GANTC	2 cut(s)	92, 292
HpaII	CCGG	2 cut(s)	267, 297
Hpy188I	TCNGA	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	137, 352
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	49, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	4 cut(s)	218, 273, 444, 452
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	17, 241
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	74, 214
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	4 cut(s)	36, 183, 238, 347
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	2 cut(s)	122, 169
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	36, 94, 213, 320, 397
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	1 cut(s)	417
MspI	CCGG	2 cut(s)	267, 297
MspR9I	CCNGG	3 cut(s)	168, 297, 326
MvaI	CCWGG	2 cut(s)	168, 326
MwoI	GCNNNNNNNGC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	17, 241
NlaIV	GGNNCC	2 cut(s)	164, 408
NmuCI	GTSAC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	450, 472
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	166, 324
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	166, 324
PspN4I	GGNNCC	2 cut(s)	164, 408
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	449, 471
Sau3AI	GATC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	168, 297, 326
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	9 cut(s)	28, 58, 208, 219, 260, 330, 412, 435, 453
SfaNI	GCATC	4 cut(s)	36, 183, 238, 347
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	2 cut(s)	470, 473
StyD4I	CCNGG	3 cut(s)	166, 295, 324
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	355, 361
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.