Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019815

Physical Location & Seq

Genomic Coordinates Reverse (-)

18798875 .. 18799601

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCACAGAGGAAGCACTGCGTTTCACTTGTTGATGCGACGGCGACCGCGAAGGCGTTTGGGAGTGCGAGTGCGAGTGGGACTTCGCATTTGATATTAACACTGCAACAACAACCGGAGGAGGAGGAAGAAGAAGAAGAAGGACAAGGATTAGTGTTAATTGTGGTGGATTTGGTGCTTAAACGCGGCAATGAAATCGGATTAGGAGGGGCTGGCGGAGCAATGAAGGGCGGGGTTGCGGGCGGTAGTTATTCCGGGAAGCGGCGGTGGAAGGGGTTGGTGATTGGAGTGTTGGGTCTGGTTTTTCCTTCCATGCTCGTTCCTCTTCCCTTCCTTCTCGATCCGATTTTGCTTTTGCAACGATACGTACCAGAACAAGGAAATTCGCCTTCAATTGGAGGATATGGTACAAAAATCATCATAAATGCTTCTAATCTGTTAGGGGTAAACTATACTAGCCAGCTTTGTAAATCGAATTCATGGGTAGAAACACATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

167

Amino Acids

17.59

Weight (kDa)

6.29

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019815)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g16080 pycom04g16120 pycom04g16160
rosa_chinensis	RchiOBHm_Chr3g0458911
rosa_roxburghii	Rroxscaffold_4G00307800
rosa_samantha	Rh1AG120700 Rh5BG059400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 186
AciI	CCGC	8 cut(s)	48, 186, 216, 231, 239, 243, 262, 265
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	382, 475
AfaI	GTAC	2 cut(s)	369, 409
AfiI	CCNNNNNNNGG	3 cut(s)	261, 377, 395
AgsI	TTSAA	1 cut(s)	393
AleI	CACNNNNGTG	1 cut(s)	496
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
AlwI	GGATC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	382, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BcnI	CCSGG	1 cut(s)	256
BfaI	CTAG	1 cut(s)	456
BisI	GCNGC	2 cut(s)	187, 263
BlsI	GCNGC	2 cut(s)	188, 264
Bme1390I	CCNGG	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 377, 395
Bse3DI	GCAATG	2 cut(s)	196, 228
BseLI	CCNNNNNNNGG	3 cut(s)	261, 377, 395
BseMI	GCAATG	2 cut(s)	196, 228
BseRI	GAGGAG	2 cut(s)	134, 137
Bsh1236I	CGCG	2 cut(s)	50, 186
Bsh1285I	CGRYCG	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	116, 255
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	261, 377, 395
BsmFI	GGGAC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	8 cut(s)	48, 186, 216, 231, 239, 243, 262, 265
BspFNI	CGCG	2 cut(s)	50, 186
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	196, 228
BssMI	GATC	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	214, 241, 461
BstFNI	CGCG	2 cut(s)	50, 186
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	254
BstSNI	TACGTA	1 cut(s)	367
BstUI	CGCG	2 cut(s)	50, 186
BtsI	GCAGTG	2 cut(s)	16, 101
BtsIMutI	CAGTG	2 cut(s)	16, 101
Cac8I	GCNNGC	3 cut(s)	214, 241, 461
Csp6I	GTAC	2 cut(s)	368, 408
CviAII	CATG	2 cut(s)	313, 480
CviJI	RGCY	3 cut(s)	212, 459, 463
CviKI_1	RGCY	3 cut(s)	212, 459, 463
CviQI	GTAC	2 cut(s)	368, 408
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	475
FaeI	CATG	2 cut(s)	316, 483
FaiI	YATR	5 cut(s)	314, 405, 422, 453, 481
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	312, 479
FauI	CCCGC	2 cut(s)	224, 232
Fnu4HI	GCNGC	2 cut(s)	187, 263
Fsp4HI	GCNGC	2 cut(s)	187, 263
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	2 cut(s)	187, 263
HapII	CCGG	2 cut(s)	116, 255
Hin1II	CATG	2 cut(s)	316, 483
HpaII	CCGG	2 cut(s)	116, 255
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	200, 345
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	8 cut(s)	46, 134, 220, 265, 318, 340, 344, 399
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	106, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	316, 483
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	6 cut(s)	129, 198, 268, 284, 384, 473
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	366
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	140, 143, 146, 149, 317
MfeI	CAATTG	1 cut(s)	393
MluCI	AATT	4 cut(s)	159, 382, 393, 475
MnlI	CCTC	7 cut(s)	3, 112, 115, 118, 200, 333, 392
MseI	TTAA	3 cut(s)	98, 158, 180
MslI	CAYNNNNRTG	1 cut(s)	496
MspI	CCGG	2 cut(s)	116, 255
MspR9I	CCNGG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	393
MvnI	CGCG	2 cut(s)	50, 186
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	316, 483
OliI	CACNNNNGTG	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	188, 264
Ppu21I	YACGTR	1 cut(s)	367
RsaI	GTAC	2 cut(s)	369, 409
RsaNI	GTAC	2 cut(s)	368, 408
RseI	CAYNNNNRTG	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	98, 158, 180
SatI	GCNGC	2 cut(s)	187, 263
Sau3AI	GATC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	2 cut(s)	369, 465
SfaNI	GCATC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	496
SnaBI	TACGTA	1 cut(s)	367
Sse9I	AATT	4 cut(s)	159, 382, 393, 475
SsiI	CCGC	8 cut(s)	48, 186, 216, 231, 239, 243, 262, 265
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	254
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	339, 473
TasI	AATT	4 cut(s)	159, 382, 393, 475
TauI	GCSGC	2 cut(s)	189, 265
Tru1I	TTAA	3 cut(s)	98, 158, 180
Tru9I	TTAA	3 cut(s)	98, 158, 180
TscAI	CASTG	2 cut(s)	23, 108
TspDTI	ATGAA	3 cut(s)	207, 239, 468
TspRI	CASTG	2 cut(s)	23, 108
XapI	RAATTY	2 cut(s)	382, 475
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.