pycom04g16120

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
18882666 .. 18883457
792 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16120.2

Sequence Viewer

Length: 420 bp
ATGCCACAGAGGAAGCACTGCGTTTCAGTTGTTGATGCGGCGGCGACCGCGAAGGCGTTTGGGAGTGCGAGTGCGAGTGGGACTTCGCATTTGATATTAACACTGCAACAACAACCGGAGGAGGAGGAAGAAGAAGAAGAAGGACAAGGATTAGTGTTAATTGTGGTGGATTTGGTGCTTAATCGCGGCAATGAAATCGGATTAGGAGGGGCTGGCGGAGCAATGAAGGGCGGGGTTGCGGGCGGTAGTTATTCCGGGAAGCGGCGGTGGAAGGGGTTGGTGATTGGAGTGTTGGGTCTGGTTTTTCCTTCCATGCTCGTTCCTCTTCTCTTCCTTCTCGGCCTTCACAATGGCTTTCACCCGCCCGGTACCAGAACAACGAAATTCGCCTTCAGGGGGTGGTTCGAAGCATGTAGATGA

Protein Analysis

140

Amino Acids

14.66

Weight (kDa)

7.85

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019815)

Species Orthologous Gene IDs
pyrus_communis pycom04g16080 pycom04g16120 pycom04g16160
rosa_chinensis RchiOBHm_Chr3g0458911
rosa_roxburghii Rroxscaffold_4G00307800
rosa_samantha Rh1AG120700 Rh5BG059400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 2 cut(s) 50, 186
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 2 cut(s) 261, 396
AoxI GGCC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
Asp718I GGTACC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 256, 366
AsuHPI GGTGA 2 cut(s) 292, 350
AsuII TTCGAA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 368
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BcnI CCSGG 2 cut(s) 256, 366
BisI GCNGC 4 cut(s) 39, 42, 187, 263
BlsI GCNGC 4 cut(s) 40, 43, 188, 264
Bme1390I CCNGG 2 cut(s) 256, 366
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 256, 366
BmsI GCATC 1 cut(s) 25
Bpu14I TTCGAA 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 256, 366
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 396
Bse3DI GCAATG 2 cut(s) 196, 228
BseLI CCNNNNNNNGG 2 cut(s) 261, 396
BseMI GCAATG 2 cut(s) 196, 228
BseRI GAGGAG 2 cut(s) 134, 137
Bsh1236I CGCG 2 cut(s) 50, 186
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 3 cut(s) 116, 255, 366
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 261, 396
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 405
BspANI GGCC 1 cut(s) 342
BspFNI CGCG 2 cut(s) 50, 186
BspLI GGNNCC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 368
BsrDI GCAATG 2 cut(s) 196, 228
Bst6I CTCTTC 2 cut(s) 330, 335
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 214, 241
BstFNI CGCG 2 cut(s) 50, 186
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 47, 218
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 254, 364
BstUI CGCG 2 cut(s) 50, 186
BsuRI GGCC 1 cut(s) 342
BtsI GCAGTG 2 cut(s) 16, 101
BtsIMutI CAGTG 2 cut(s) 16, 101
Cac8I GCNNGC 2 cut(s) 214, 241
Csp6I GTAC 1 cut(s) 369
CviAII CATG 2 cut(s) 313, 411
CviJI RGCY 3 cut(s) 212, 342, 354
CviKI_1 RGCY 3 cut(s) 212, 342, 354
CviQI GTAC 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 330, 335
EarI CTCTTC 2 cut(s) 330, 335
EciI GGCGGA 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 376
FaeI CATG 2 cut(s) 316, 414
FaiI YATR 2 cut(s) 314, 412
FaqI GGGAC 1 cut(s) 94
FatI CATG 2 cut(s) 312, 410
FauI CCCGC 3 cut(s) 224, 232, 369
Fnu4HI GCNGC 4 cut(s) 39, 42, 187, 263
Fsp4HI GCNGC 4 cut(s) 39, 42, 187, 263
GluI GCNGC 4 cut(s) 39, 42, 187, 263
HaeIII GGCC 1 cut(s) 342
HapII CCGG 3 cut(s) 116, 255, 366
Hin1II CATG 2 cut(s) 316, 414
HpaII CCGG 3 cut(s) 116, 255, 366
HphI GGTGA 2 cut(s) 292, 350
Hpy188I TCNGA 1 cut(s) 200
HpyAV CCTTC 8 cut(s) 46, 134, 220, 265, 318, 344, 353, 400
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 218
Hsp92II CATG 2 cut(s) 316, 414
KpnI GGTACC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 7 cut(s) 129, 198, 268, 284, 379, 379, 385
LweI GCATC 1 cut(s) 25
MboII GAAGA 6 cut(s) 140, 143, 146, 149, 317, 322
MluCI AATT 2 cut(s) 159, 383
MnlI CCTC 6 cut(s) 3, 112, 115, 118, 200, 333
MseI TTAA 3 cut(s) 98, 158, 180
MslI CAYNNNNRTG 1 cut(s) 415
MspI CCGG 3 cut(s) 116, 255, 366
MspR9I CCNGG 2 cut(s) 256, 366
MvnI CGCG 2 cut(s) 50, 186
MwoI GCNNNNNNNGC 2 cut(s) 47, 218
NciI CCSGG 2 cut(s) 256, 366
NlaIII CATG 2 cut(s) 316, 414
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 318
NspI RCATGY 1 cut(s) 414
NspV TTCGAA 1 cut(s) 405
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 4 cut(s) 40, 43, 188, 264
PspN4I GGNNCC 1 cut(s) 370
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 415
SaqAI TTAA 3 cut(s) 98, 158, 180
SatI GCNGC 4 cut(s) 39, 42, 187, 263
ScrFI CCNGG 2 cut(s) 256, 366
SfaNI GCATC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 415
Sse9I AATT 2 cut(s) 159, 383
StyD4I CCNGG 2 cut(s) 254, 364
TaqI TCGA 1 cut(s) 405
TasI AATT 2 cut(s) 159, 383
TauI GCSGC 4 cut(s) 41, 44, 189, 265
Tru1I TTAA 3 cut(s) 98, 158, 180
Tru9I TTAA 3 cut(s) 98, 158, 180
TscAI CASTG 2 cut(s) 23, 108
TspDTI ATGAA 2 cut(s) 207, 239
TspRI CASTG 2 cut(s) 23, 108
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.