Rh1AG120700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
22397963 .. 22398357
395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG120700.1

Sequence Viewer

Length: 243 bp
ATGGAAAGGTTTGGTGGTAGGAGTCTTAGACCTGGTTCTGCTTTCTATGCTCGTGCCTCTTCTCTTCCTTCTCTGTATTCACAATGGCTTTCAAGGATATGGTTCGGAGCAGCCGAATTCGCCTACAGTAAGGACTTGGTTTCTGGTTTGTTTTGGTTAGGTGGAGATTTTGTGCAAGAATTTCCCATAAAACGTTTTATACGAGTTTTGAGAGAGATGAATCTGTGGAAATTGATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.34

Weight (kDa)

10.26

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019815)

Species Orthologous Gene IDs
pyrus_communis pycom04g16080 pycom04g16120 pycom04g16160
rosa_chinensis RchiOBHm_Chr3g0458911
rosa_roxburghii Rroxscaffold_4G00307800
rosa_samantha Rh1AG120700 Rh5BG059400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 193
AcsI RAATTY 2 cut(s) 116, 179
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 116, 179
BauI CACGAG 1 cut(s) 51
BbvI GCAGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
BseBI CCWGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 128, 240
Bst6I CTCTTC 2 cut(s) 64, 69
BstDEI CTNAG 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 47, 119
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 122
CsiI ACCWGGT 1 cut(s) 31
CviJI RGCY 2 cut(s) 88, 113
CviKI_1 RGCY 2 cut(s) 88, 113
DdeI CTNAG 1 cut(s) 26
Eam1104I CTCTTC 2 cut(s) 64, 69
EarI CTCTTC 2 cut(s) 64, 69
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 31
FaiI YATR 4 cut(s) 48, 100, 188, 200
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 22, 220
Hpy188I TCNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 128, 240
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 119
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 193
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 18, 45, 129
Lsp1109I GCAGC 1 cut(s) 122
MabI ACCWGGT 1 cut(s) 31
MaeII ACGT 1 cut(s) 193
MboII GAAGA 2 cut(s) 51, 56
MluCI AATT 3 cut(s) 116, 179, 230
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 47, 119
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 199
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp1406I AACGTT 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
SatI GCNGC 1 cut(s) 111
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 33
SetI ASST 4 cut(s) 11, 34, 163, 196
SexAI ACCWGGT 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 124
SgeI CNNG 9 cut(s) 44, 45, 63, 65, 105, 148, 156, 188, 215
Sse9I AATT 3 cut(s) 116, 179, 230
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 128, 240
TaiI ACGT 1 cut(s) 196
TasI AATT 3 cut(s) 116, 179, 230
TfiI GAWTC 1 cut(s) 220
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 233
XapI RAATTY 2 cut(s) 116, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.