Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0017121

Physical Location & Seq

Genomic Coordinates Forward (+)

21435148 .. 21437100

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGCAGCAATGTGGGCGAGGCATTCGCTGCCTTTCGAGTTCGAGTTCAATGGGGAGGAGGATCCACTGGGATCCAACTGTTGCGCTCGAACTCAATCACCCGGCTCTTGTGTTGCTGGAGAAGTGCAGCACAAGGCACCATTTCAAGCAGATTTTGGGGCAAATGATGAGGACCTGTTTACTTGGTCAGACATTTCCCATGAGCCGGCTTCTCACATTCTCCGCCATCTCGCACCCTGAAAATTTAGACATGGCCATCCGCCTTTTCGATCACTTTACTCCGAATCCCAATCTTTACATCTATAATTCGATGATTTCTGCATTATCTTTCTCGAAAAGCCAAGCATTTGCTCTGTACAGTTCCATGCTCAAAGCTGGCATATGCCCTGATAAACACACCCTTCTTTACTTGCTCCAAGCATCCGAATGTGTAGTGGAAGCAAAGCAAATCCACAGCCATGCTGTAGTTACAGGTTTGTTGTCACATCGGTATTTGCAGAACACCCTCATGAAGATATATCTGGAAAAAGGGGAGATGGGGCTTGCTCAACAGTTGTTTGATGACGTGCCAATGCCGGATACAGTCCCGTTCAATATCATGATCGTTGGTTATGCTAAGATGGGATATTTTTCGGAAGCTCTGCAAGTGTTTCATGAAATGGTGGGTTTGGGTCTCGAGCCGGATGAGTTTACCATTCTAGGACTTCTTATATCTTGTGGACTATTAGGAGATGCTCGGCTTGGAATGTCTGTTCATGCATGGATTGAGAGGAGGAAGGCCATTACGTCTGGAAATTTGATTTTGGGTAATGCTCTTTTAGACATGTATGTGAAATGGAACAAATTGGAGGTTGCCCAAAGTCTTTTTGATGCTTTAACGGAGAAGGATATCGTATCCTGGAACACCATGGCTGCAGGATATGCCAAGGTTGGGAAAATAGAACTTGCGCAGAATTATTTTGAGCAAATGCCTAGAAGAGATCTTGTTTCTTGGAGTTCATTAATTGCTGGATATGCCAAGAAGGGCGATTACACAATGGCAGTGAAGGTATTCAACGAAATGATTACGGAGAATGCGAAGCCTGACAGTAACACTCTGGTTAATTTGGTCTCTGCTGCAGCGGAAACTGGAGCGCTGGACCATGGAAGATCAATGCATGGCTTGATTGTGAGGATGCAGTTGAAAATAGATGTATTTTTGGGTTCGGCATTAATAGACATGTACTGCAAGGCCGGAAGCATTGAACGAGCCTTCATGGTTTTCCGGGGACTGACAGAGAAAGATGTTACCGTATGGACAACAATGATTTCTGGATTCGCATTCCATGGTTACGGGCGCAAAGCCCTGGATCTGTTTTCGGAGATGCAGAGAGGGCTATCACCAAACGGGGTGACTCTTCTTGCTGTTCTTACAGCTTGTAGCCACAGCGGACTTGTGGATGAAGGGCTTAATCTATTCAACAACATGGACAAAAAATTTGGTATTGAACCAGGAGTTGAGCACTATGGGTGTTTAGTGGACCTTTTATGTCGATCGGGAAGGCTGGCAGAGGCGAAAGAAGTGATGAAAAAGATGCCGGTAAAGCCATGTCGAAACATTTGGGGAGCAATGCTGAGTGCTTGTAGAGCACAGGGAGACATGGAACTAGCTGAAACAGCTTCAGCAGAGCTACTGAAGTTAGAGCCCGGGAGAGAGGGCGGATACATTATGATGTCGAATATTTACGCTGCTTGTGGAAAGTGGAGCTACTCGGATAAGATTCGAGAAGTCATGGAGGTCAGGGGAGTGAAGAAGACCGCAGGTTGCAGTAGCGTGAACGTCGACGGAGTTGTCCACAACTTTGTTGCCGCCGATAAGCGGCATCCGAGATGGGAAGAAATCTTCCTTGTTTTGCAGTGCATGAAAAGTGAAATGAAGCTGGCTGCTGGTTTCCAATTTCATCCATTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

651

Amino Acids

72.33

Weight (kDa)

7.84

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	192 - 235	1.2e-09	PPR repeat family
PPR	PF01535	196 - 225	3.3e-07	PPR repeat
PPR_2	PF13041	327 - 371	9.7e-10	PPR repeat family
PPR	PF01535	329 - 357	1.2e-07	PPR repeat
PPR_2	PF13041	427 - 474	1.5e-08	PPR repeat family
PPR	PF01535	431 - 457	2.1e-06	PPR repeat
PPR_1	PF12854	494 - 525	7e-07	PPR repeat
E_motif	PF20431	546 - 605	5.8e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04750
malus_domestica	MD04G1224800.v1.1
prunus_persica	Prupe.6G343500_v2.0.a1
pyrus_communis	pycom04g19800
rosa_chinensis	RchiOBHm_Chr3g0451101
rosa_laevigata	RLG00000025690
rosa_multiflora	Rmu_ssc0000461.1_g000006
rosa_roxburghii	Rroxscaffold_6G00428570
rosa_rugosa	Rorug02G0631300
rosa_samantha	Rh3AG034300 Rh3BG034600 Rh3DG034300
rosa_wichuraiana	Rw3G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1829
Acc16I	TGCGCA	1 cut(s)	948
Acc36I	ACCTGC	1 cut(s)	1790
AccB1I	GGYRCC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	1821
AciI	CCGC	8 cut(s)	222, 259, 1121, 1428, 1698, 1797, 1848, 1858
AclWI	GGATC	5 cut(s)	55, 65, 68, 78, 1356
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	3 cut(s)	241, 793, 1475
AcuI	CTGAAG	2 cut(s)	1644, 1694
AfaI	GTAC	2 cut(s)	356, 1223
AfeI	AGCGCT	1 cut(s)	1134
AfiI	CCNNNNNNNGG	3 cut(s)	204, 930, 1857
AflIII	ACRYGT	2 cut(s)	822, 1218
AgsI	TTSAA	8 cut(s)	48, 145, 592, 1054, 1183, 1244, 1459, 1487
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	896, 1344, 1489
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	8 cut(s)	374, 638, 1415, 1649, 1658, 1669, 1746, 1918
AluI	AGCT	8 cut(s)	374, 638, 1415, 1649, 1658, 1669, 1746, 1918
Alw21I	GWGCWC	2 cut(s)	1503, 1630
Alw26I	GTCTC	3 cut(s)	677, 1114, 1629
AlwI	GGATC	5 cut(s)	55, 65, 68, 78, 1356
Ama87I	CYCGRG	2 cut(s)	674, 1685
Aor51HI	AGCGCT	1 cut(s)	1134
AoxI	GGCC	3 cut(s)	252, 777, 1230
ApeKI	GCWGC	8 cut(s)	4, 27, 126, 911, 1115, 1118, 1727, 1922
ApoI	RAATTY	3 cut(s)	241, 793, 1475
ArsI	GACNNNNNNTTYG	2 cut(s)	1460, 1492
AseI	ATTAAT	2 cut(s)	1001, 1211
Asp700I	GAANNNNTTC	1 cut(s)	1049
AspLEI	GCGC	4 cut(s)	85, 949, 1135, 1338
AspS9I	GGNCC	3 cut(s)	171, 1138, 1519
AsuC2I	CCSGG	4 cut(s)	101, 1265, 1686, 1687
AsuHPI	GGTGA	3 cut(s)	89, 1371, 1402
AvaI	CYCGRG	2 cut(s)	674, 1685
AvaII	GGWCC	3 cut(s)	171, 1138, 1519
BalI	TGGCCA	1 cut(s)	254
BamHI	GGATCC	2 cut(s)	60, 70
BanI	GGYRCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	1686
BarI	GAAGNNNNNNTAC	2 cut(s)	1013, 1045
BbsI	GAAGAC	1 cut(s)	1799
Bbv12I	GWGCWC	2 cut(s)	1503, 1630
BbvI	GCAGC	8 cut(s)	14, 16, 138, 898, 1102, 1130, 1714, 1909
BccI	CCATC	5 cut(s)	233, 263, 529, 613, 1863
BciT130I	CCWGG	3 cut(s)	898, 1346, 1491
BciVI	GTATCC	3 cut(s)	571, 904, 1694
BcnI	CCSGG	4 cut(s)	101, 1265, 1686, 1687
BcoDI	GTCTC	3 cut(s)	677, 1114, 1629
BfaI	CTAG	3 cut(s)	698, 972, 1646
BfmI	CTRYAG	3 cut(s)	462, 912, 1116
BfoI	RGCGCY	1 cut(s)	1136
BfuAI	ACCTGC	1 cut(s)	1790
BfuI	GTATCC	3 cut(s)	571, 904, 1694
BglII	AGATCT	1 cut(s)	979
Bme1390I	CCNGG	7 cut(s)	101, 898, 1265, 1346, 1491, 1686, 1687
Bme18I	GGWCC	3 cut(s)	171, 1138, 1519
BmeT110I	CYCGRG	2 cut(s)	674, 1685
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	3 cut(s)	171, 1138, 1519
BmiI	GGNNCC	3 cut(s)	62, 72, 137
BmrFI	CCNGG	7 cut(s)	101, 898, 1265, 1346, 1491, 1686, 1687
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	7 cut(s)	428, 721, 859, 1164, 1353, 1563, 1870
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	1799
BpmI	CTGGAG	2 cut(s)	137, 1149
BpuMI	CCSGG	4 cut(s)	101, 1265, 1686, 1687
BsaI	GGTCTC	2 cut(s)	677, 1114
BsaJI	CCNNGG	7 cut(s)	906, 924, 1141, 1264, 1324, 1344, 1685
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 930, 1857
Bse118I	RCCGGY	2 cut(s)	204, 1576
Bse1I	ACTGG	2 cut(s)	71, 1132
Bse3DI	GCAATG	2 cut(s)	14, 1614
BseBI	CCWGG	3 cut(s)	898, 1346, 1491
BseDI	CCNNGG	7 cut(s)	906, 924, 1141, 1264, 1324, 1344, 1685
BseGI	GGATG	7 cut(s)	255, 419, 688, 1179, 1444, 1861, 1939
BseLI	CCNNNNNNNGG	3 cut(s)	204, 930, 1857
BseMI	GCAATG	2 cut(s)	14, 1614
BseMII	CTCAG	1 cut(s)	1604
BseNI	ACTGG	2 cut(s)	71, 1132
BseRI	GAGGAG	2 cut(s)	70, 784
BseXI	GCAGC	8 cut(s)	14, 16, 138, 898, 1102, 1130, 1714, 1909
BsgI	GTGCAG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	1535
BshFI	GGCC	3 cut(s)	254, 779, 1232
BshNI	GGYRCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	1535
BsiHKAI	GWGCWC	2 cut(s)	1503, 1630
BsiHKCI	CYCGRG	2 cut(s)	674, 1685
BsiSI	CCGG	8 cut(s)	101, 205, 575, 680, 1233, 1264, 1577, 1686
BslFI	GGGAC	2 cut(s)	569, 1281
BslI	CCNNNNNNNGG	3 cut(s)	204, 930, 1857
BsmAI	GTCTC	3 cut(s)	677, 1114, 1629
BsmFI	GGGAC	2 cut(s)	569, 1281
BsmI	GAATGC	3 cut(s)	21, 1078, 1319
BsnI	GGCC	3 cut(s)	254, 779, 1232
Bso31I	GGTCTC	2 cut(s)	677, 1114
BsoBI	CYCGRG	2 cut(s)	674, 1685
Bsp1286I	GDGCHC	3 cut(s)	1503, 1630, 1686
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
Bsp19I	CCATGG	3 cut(s)	906, 1141, 1324
BspACI	CCGC	8 cut(s)	222, 259, 1121, 1428, 1698, 1797, 1848, 1858
BspANI	GGCC	3 cut(s)	254, 779, 1232
BspCNI	CTCAG	1 cut(s)	1605
BspHI	TCATGA	3 cut(s)	507, 597, 652
BspLI	GGNNCC	3 cut(s)	62, 72, 137
BspMAI	CTGCAG	2 cut(s)	916, 1120
BspMI	ACCTGC	1 cut(s)	1790
BspPI	GGATC	5 cut(s)	55, 65, 68, 78, 1356
BspT107I	GGYRCC	1 cut(s)	135
BspTNI	GGTCTC	2 cut(s)	677, 1114
BsrDI	GCAATG	2 cut(s)	14, 1614
BsrFI	RCCGGY	2 cut(s)	204, 1576
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	71, 1132
BssAI	RCCGGY	2 cut(s)	204, 1576
BssECI	CCNNGG	7 cut(s)	906, 924, 1141, 1264, 1324, 1344, 1685
BssMI	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
BssT1I	CCWWGG	4 cut(s)	906, 924, 1141, 1324
Bst2UI	CCWGG	3 cut(s)	898, 1346, 1491
Bst4CI	ACNGT	6 cut(s)	79, 359, 552, 583, 1088, 1291
Bst6I	CTCTTC	2 cut(s)	970, 1401
BstAPI	GCANNNNNTGC	2 cut(s)	27, 920
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	5 cut(s)	206, 376, 543, 1545, 1920
BstDEI	CTNAG	2 cut(s)	615, 1613
BstDSI	CCRYGG	3 cut(s)	906, 1141, 1324
BstF5I	GGATG	7 cut(s)	255, 419, 688, 1179, 1444, 1861, 1939
BstH2I	RGCGCY	1 cut(s)	1136
BstHHI	GCGC	4 cut(s)	85, 949, 1135, 1338
BstKTI	GATC	8 cut(s)	63, 73, 271, 603, 982, 1151, 1351, 1535
BstMAI	GTCTC	3 cut(s)	677, 1114, 1629
BstMBI	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
BstMCI	CGRYCG	1 cut(s)	1535
BstMWI	GCNNNNNNNGC	8 cut(s)	13, 27, 920, 1013, 1372, 1582, 1625, 1655
BstNI	CCWGG	3 cut(s)	898, 1346, 1491
BstNSI	RCATGY	2 cut(s)	826, 1222
BstSCI	CCNGG	7 cut(s)	99, 896, 1263, 1344, 1489, 1684, 1685
BstSFI	CTRYAG	3 cut(s)	462, 912, 1116
BstV1I	GCAGC	8 cut(s)	14, 16, 138, 898, 1102, 1130, 1714, 1909
BstV2I	GAAGAC	1 cut(s)	1799
BstX2I	RGATCY	4 cut(s)	60, 70, 979, 1348
BstYI	RGATCY	4 cut(s)	60, 70, 979, 1348
BsuI	GTATCC	3 cut(s)	571, 904, 1694
BsuRI	GGCC	3 cut(s)	254, 779, 1232
BtgI	CCRYGG	3 cut(s)	906, 1141, 1324
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	7 cut(s)	255, 419, 688, 1179, 1444, 1861, 1939
BtsI	GCAGTG	2 cut(s)	1047, 1901
BtsIMutI	CAGTG	3 cut(s)	64, 1047, 1901
BveI	ACCTGC	1 cut(s)	1790
Cac8I	GCNNGC	5 cut(s)	206, 376, 543, 1545, 1920
CciI	TCATGA	3 cut(s)	507, 597, 652
CfoI	GCGC	4 cut(s)	85, 949, 1135, 1338
Cfr10I	RCCGGY	2 cut(s)	204, 1576
Cfr13I	GGNCC	3 cut(s)	171, 1138, 1519
Cfr9I	CCCGGG	1 cut(s)	1685
Csp6I	GTAC	2 cut(s)	355, 1222
CviQI	GTAC	2 cut(s)	355, 1222
DdeI	CTNAG	2 cut(s)	615, 1613
DpnI	GATC	8 cut(s)	62, 72, 270, 602, 981, 1150, 1350, 1534
DpnII	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
DrdI	GACNNNNNNGTC	1 cut(s)	1829
DseDI	GACNNNNNNGTC	1 cut(s)	1829
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	970, 1401
EarI	CTCTTC	2 cut(s)	970, 1401
EciI	GGCGGA	3 cut(s)	211, 248, 1713
Eco130I	CCWWGG	4 cut(s)	906, 924, 1141, 1324
Eco24I	GRGCYC	1 cut(s)	1686
Eco31I	GGTCTC	2 cut(s)	677, 1114
Eco32I	GATATC	1 cut(s)	889
Eco47I	GGWCC	3 cut(s)	171, 1138, 1519
Eco47III	AGCGCT	1 cut(s)	1134
Eco57I	CTGAAG	2 cut(s)	1644, 1694
Eco88I	CYCGRG	2 cut(s)	674, 1685
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	3 cut(s)	896, 1344, 1489
EcoRV	GATATC	1 cut(s)	889
EcoT14I	CCWWGG	4 cut(s)	906, 924, 1141, 1324
EcoT22I	ATGCAT	2 cut(s)	760, 1158
EcoT38I	GRGCYC	1 cut(s)	1686
ErhI	CCWWGG	4 cut(s)	906, 924, 1141, 1324
FaqI	GGGAC	2 cut(s)	569, 1281
FauNDI	CATATG	1 cut(s)	380
FblI	GTMKAC	1 cut(s)	1821
FokI	GGATG	7 cut(s)	242, 406, 695, 1186, 1451, 1848, 1926
FriOI	GRGCYC	1 cut(s)	1686
FspBI	CTAG	3 cut(s)	698, 972, 1646
FspI	TGCGCA	1 cut(s)	948
GlaI	GCGC	4 cut(s)	84, 948, 1134, 1337
GsuI	CTGGAG	2 cut(s)	137, 1149
HaeII	RGCGCY	1 cut(s)	1136
HaeIII	GGCC	3 cut(s)	254, 779, 1232
HapII	CCGG	8 cut(s)	101, 205, 575, 680, 1233, 1264, 1577, 1686
HhaI	GCGC	4 cut(s)	85, 949, 1135, 1338
Hin6I	GCGC	4 cut(s)	83, 947, 1133, 1336
HinP1I	GCGC	4 cut(s)	83, 947, 1133, 1336
HincII	GTYRAC	1 cut(s)	1822
HindII	GTYRAC	1 cut(s)	1822
HinfI	GANTC	4 cut(s)	283, 1314, 1393, 1759
HpaII	CCGG	8 cut(s)	101, 205, 575, 680, 1233, 1264, 1577, 1686
HphI	GGTGA	3 cut(s)	89, 1371, 1402
Hpy166II	GTNNAC	7 cut(s)	179, 690, 719, 1519, 1816, 1822, 1834
Hpy188I	TCNGA	7 cut(s)	189, 282, 424, 634, 1360, 1753, 1866
Hpy8I	GTNNAC	7 cut(s)	179, 690, 719, 1519, 1816, 1822, 1834
Hpy99I	CGWCG	2 cut(s)	1823, 1826
HpyAV	CCTTC	8 cut(s)	410, 769, 877, 1015, 1039, 1261, 1436, 1533
HpyCH4III	ACNGT	6 cut(s)	79, 359, 552, 583, 1088, 1291
HpyCH4IV	ACGT	3 cut(s)	564, 785, 1818
HpyF10VI	GCNNNNNNNGC	8 cut(s)	13, 27, 920, 1013, 1372, 1582, 1625, 1655
HpyF3I	CTNAG	2 cut(s)	615, 1613
HpySE526I	ACGT	3 cut(s)	564, 785, 1818
HspAI	GCGC	4 cut(s)	83, 947, 1133, 1336
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
LmnI	GCTCC	4 cut(s)	417, 1130, 1604, 1743
Lsp1109I	GCAGC	8 cut(s)	14, 16, 138, 898, 1102, 1130, 1714, 1909
LweI	GCATC	7 cut(s)	428, 721, 859, 1164, 1353, 1563, 1870
MaeI	CTAG	3 cut(s)	698, 972, 1646
MaeII	ACGT	3 cut(s)	564, 785, 1818
MaeIII	GTNAC	6 cut(s)	466, 480, 1088, 1285, 1328, 1390
MalI	GATC	8 cut(s)	62, 72, 270, 602, 981, 1150, 1350, 1534
MboI	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
MboII	GAAGA	8 cut(s)	523, 987, 1158, 1388, 1801, 1804, 1873, 1886
MflI	RGATCY	4 cut(s)	60, 70, 979, 1348
MhlI	GDGCHC	3 cut(s)	1503, 1630, 1686
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	9 cut(s)	241, 304, 793, 842, 952, 1002, 1102, 1475, 1934
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	1387
MmeI	TCCRAC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	254
Mph1103I	ATGCAT	2 cut(s)	760, 1158
MroNI	GCCGGC	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	1049
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	5 cut(s)	875, 1001, 1101, 1211, 1449
MslI	CAYNNNNRTG	5 cut(s)	424, 456, 506, 827, 1709
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	1121, 1428
MspI	CCGG	8 cut(s)	101, 205, 575, 680, 1233, 1264, 1577, 1686
MspR9I	CCNGG	7 cut(s)	101, 898, 1265, 1346, 1491, 1686, 1687
Mva1269I	GAATGC	3 cut(s)	21, 1078, 1319
MvaI	CCWGG	3 cut(s)	898, 1346, 1491
MwoI	GCNNNNNNNGC	8 cut(s)	13, 27, 920, 1013, 1372, 1582, 1625, 1655
NaeI	GCCGGC	1 cut(s)	206
NciI	CCSGG	4 cut(s)	101, 1265, 1686, 1687
NcoI	CCATGG	3 cut(s)	906, 1141, 1324
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
NgoMIV	GCCGGC	1 cut(s)	204
NlaIV	GGNNCC	3 cut(s)	62, 72, 137
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	2 cut(s)	480, 1390
NsbI	TGCGCA	1 cut(s)	948
NsiI	ATGCAT	2 cut(s)	760, 1158
NspI	RCATGY	2 cut(s)	826, 1222
PaeR7I	CTCGAG	1 cut(s)	674
PagI	TCATGA	3 cut(s)	507, 597, 652
PciI	ACATGT	2 cut(s)	822, 1218
PcsI	WCGNNNNNNNCGW	1 cut(s)	1073
PctI	GAATGC	3 cut(s)	21, 1078, 1319
PdiI	GCCGGC	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	1049
PfeI	GAWTC	3 cut(s)	283, 1314, 1759
PfoI	TCCNGGA	1 cut(s)	896
Ple19I	CGATCG	1 cut(s)	1535
PleI	GAGTC	1 cut(s)	1387
PpsI	GAGTC	1 cut(s)	1387
PpuMI	RGGWCCY	1 cut(s)	171
PscI	ACATGT	2 cut(s)	822, 1218
PshBI	ATTAAT	2 cut(s)	1001, 1211
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	896, 1344, 1489
PspGI	CCWGG	3 cut(s)	896, 1344, 1489
PspN4I	GGNNCC	3 cut(s)	62, 72, 137
PspPI	GGNCC	3 cut(s)	171, 1138, 1519
PspPPI	RGGWCCY	1 cut(s)	171
PstI	CTGCAG	2 cut(s)	916, 1120
PsuI	RGATCY	4 cut(s)	60, 70, 979, 1348
PvuI	CGATCG	1 cut(s)	1535
RsaI	GTAC	2 cut(s)	356, 1223
RsaNI	GTAC	2 cut(s)	355, 1222
RseI	CAYNNNNRTG	5 cut(s)	424, 456, 506, 827, 1709
SalI	GTCGAC	1 cut(s)	1820
SaqAI	TTAA	5 cut(s)	875, 1001, 1101, 1211, 1449
Sau3AI	GATC	8 cut(s)	60, 70, 268, 600, 979, 1148, 1348, 1532
Sau96I	GGNCC	3 cut(s)	171, 1138, 1519
SchI	GAGTC	1 cut(s)	1387
ScrFI	CCNGG	7 cut(s)	101, 898, 1265, 1346, 1491, 1686, 1687
SduI	GDGCHC	3 cut(s)	1503, 1630, 1686
SfaNI	GCATC	7 cut(s)	428, 721, 859, 1164, 1353, 1563, 1870
SfcI	CTRYAG	3 cut(s)	462, 912, 1116
Sfr274I	CTCGAG	1 cut(s)	674
SgrDI	CGTCGACG	1 cut(s)	1820
SinI	GGWCC	3 cut(s)	171, 1138, 1519
SlaI	CTCGAG	1 cut(s)	674
SmaI	CCCGGG	1 cut(s)	1687
SmiMI	CAYNNNNRTG	5 cut(s)	424, 456, 506, 827, 1709
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	9 cut(s)	241, 304, 793, 842, 952, 1002, 1102, 1475, 1934
SsiI	CCGC	8 cut(s)	222, 259, 1121, 1428, 1698, 1797, 1848, 1858
SspI	AATATT	1 cut(s)	1720
SspMI	CTAG	3 cut(s)	698, 972, 1646
StyD4I	CCNGG	7 cut(s)	99, 896, 1263, 1344, 1489, 1684, 1685
StyI	CCWWGG	4 cut(s)	906, 924, 1141, 1324
TaaI	ACNGT	6 cut(s)	79, 359, 552, 583, 1088, 1291
TaiI	ACGT	3 cut(s)	567, 788, 1821
TasI	AATT	9 cut(s)	241, 304, 793, 842, 952, 1002, 1102, 1475, 1934
TatI	WGTACW	2 cut(s)	354, 1221
TauI	GCSGC	2 cut(s)	1850, 1861
TfiI	GAWTC	3 cut(s)	283, 1314, 1759
Tru1I	TTAA	5 cut(s)	875, 1001, 1101, 1211, 1449
Tru9I	TTAA	5 cut(s)	875, 1001, 1101, 1211, 1449
TscAI	CASTG	3 cut(s)	71, 1047, 1901
TseFI	GTSAC	2 cut(s)	480, 1390
TseI	GCWGC	8 cut(s)	4, 27, 126, 911, 1115, 1118, 1727, 1922
Tsp45I	GTSAC	2 cut(s)	480, 1390
TspGWI	ACGGA	3 cut(s)	893, 1082, 1839
TspMI	CCCGGG	1 cut(s)	1685
TspRI	CASTG	3 cut(s)	71, 1047, 1901
VpaK11BI	GGWCC	3 cut(s)	171, 1138, 1519
VspI	ATTAAT	2 cut(s)	1001, 1211
XapI	RAATTY	3 cut(s)	241, 793, 1475
XceI	RCATGY	2 cut(s)	826, 1222
XhoI	CTCGAG	1 cut(s)	674
XmaI	CCCGGG	1 cut(s)	1685
XmiI	GTMKAC	1 cut(s)	1821
XmnI	GAANNNNTTC	1 cut(s)	1049
XspI	CTAG	3 cut(s)	698, 972, 1646
Zsp2I	ATGCAT	2 cut(s)	760, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.