Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017121

Physical Location & Seq

Genomic Coordinates Reverse (-)

2288376 .. 2291180

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGTACCAATGTGGGCGAGGTATCCGCCTTCTAAGTTCAGCTTCAACGAGCAGCAGGAGCCTCTGGGATCCGACTGTTGCCCTTGAACTCAATCACCCAACTCTTGTATTGCTGGAGAAATGTCGTACGAGGTACCATTTCAAACAGATTTTGGGGCAGATGATGAGGACCTGTCTCATCGGTCAAACATTTCCCATGAGCAGGCTCCTCACATTCTCAGTCATCTCGTACCCTGATAATTTAGACATTGCAATTCTCCTTTTCAATCACTATACTCCTTGTCCTAATCTTTACATATACAATTGCATGATCTCTGCCTTATCTTTCTCGAAAAGTCAATCATTTGGCCTATACAAGTCCATGCTCTACTCTGATATATACCCAGATAAACACACCCTTCTTTACTTACTCCGAGCATCCAAGTATGTATCAGATGCAAAGCAAATTCACTGTCATGCCATTGTTACCGGTTTGTTGTCACAGGGATACCTGCAAAACAGCCTCATCAAGATGTATCTGGAGAAAGGACAAATGGAGCTAGCTCGCCAGGTTTTCCATGATCTGCCAACACCAGATAGGGTCTCATTTAATATCATGATCGTTGGTTATGCTAAGAAGGGATATTGTTTAGAAGCTCTACAACTTTTCTATGAAATGATGGATTTGGGTCTTAAACCGGATGACTTTACCATTCTAGGACTTCTTATCTCTTGTGGAGTATTAGGAGATGCTCGAATGGGAATATCTGTACATGCATGGATTGAGAGGAGGAAAACCATTACTTCTTCAAATTTGATCTTGGGTAACGCTCTTTTAGACATGTATGTGAAGTTCAATAAACTGGAGACTGCCTGTAATATTTTTTATGCTTTAGTGGAGAAAGATATTGTTTCGTGGAACACCATGATTGCAGGGTATGCTAAGGTTGGCAATTTAGAACTTGCCCACAATTTTTTCAAGCAAATGCCTAGAAGAGATCTTGTTTCTTGGAATTCGTTGATTTCTGGCTATGCCAAGAGGGGTGATTATGAGAAGGTAATTAAGGTAGTCCACAATATGGTAGCAGAGAACGTGAGGCCTGATAATATCACTTTGGTTAATTTGGTCTCTGCTGCAGCAGAAATTGGAGCACTGGACCAAGGTAAATGGATGCATGGCTTGATTTTGAGAATGCAGATGAAAATAGATGCATTTATGGGTTCTGCATTAATAGACATGTACTGCAAGGCTGGAAGCATAGAAAGAGCATTCTTGGTTTTCAGGGGATTGACAGTGAAAGATGTGACCGTATGGACAACAATGATCACTGGATTTGCATTTCATGGTCATGGAAGGAAAGCTCTGGATCTGTTTTCTGAGATGCAGAGATTTCTATTGCCAAATGGGGTGACTCTTGTTGCCGCTCTTACAGCTTGTAGTCATAGTGGACTTGTGGAAGAAGGGCTCAGCATATTCAACAATATGAAGAAAAAGTTTGATATTGAGCCCGGGATTGAGCACTATGGCTGTTTAGTGGATCTTTTAGGTCGATCAGGGAGGTTGGTAGAGGCAAAAGATGTGATTGAAAAGATGCCAATAAAACCAAGTCGAAACATCTGGGGAGCAATGCTGAGTGCTTGTAGAGCTCATAGAAACATGGAACTAGCCGAAATAGCTTCCACAGAGCTACTCAAGTTAGAGCCTGAGAAAGAAGGTGGATATATATTGTTGTCTAACATATACGCTGCCTGCGGGAGGTGGAGCTCCTCGGATAAGATTAGAGAAATCATGGAAATAAGAGGAGTGAAGAAGACCGCAGGTTGCAGTAGCGTAGTTATTGATGGAGTTATCCATGACTTTGTTGCTGCGGATAAGCGGCATCCAAGGTGGGAAGAGATCTTTCTTATTTTGCAGTGTCTGAAAACTGAAATGAAGCTAGATGATACTGGTTTCGCCAATTTTGAGCTTTGTTTGGAAACAGAAACCAATGTTACTAGACTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

661

Amino Acids

74.56

Weight (kDa)

8.5

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 234	5.4e-09	PPR repeat family
PPR	PF01535	194 - 224	2.5e-07	PPR repeat
PPR_2	PF13041	294 - 326	8.6e-08	PPR repeat family
PPR	PF01535	297 - 326	3e-07	PPR repeat
PPR_2	PF13041	326 - 370	7.3e-10	PPR repeat family
PPR	PF01535	328 - 357	5.8e-07	PPR repeat
PPR_2	PF13041	426 - 471	1.9e-06	PPR repeat family
PPR	PF01535	430 - 456	5.9e-06	PPR repeat
E_motif	PF20431	543 - 604	2.4e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04750
malus_domestica	MD04G1224800.v1.1
prunus_persica	Prupe.6G343500_v2.0.a1
pyrus_communis	pycom04g19800
rosa_chinensis	RchiOBHm_Chr3g0451101
rosa_laevigata	RLG00000025690
rosa_multiflora	Rmu_ssc0000461.1_g000006
rosa_roxburghii	Rroxscaffold_6G00428570
rosa_rugosa	Rorug02G0631300
rosa_samantha	Rh3AG034300 Rh3BG034600 Rh3DG034300
rosa_wichuraiana	Rw3G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	498, 1787
Acc65I	GGTACC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	1057
AccBSI	CCGCTC	1 cut(s)	1403
AciI	CCGC	6 cut(s)	25, 1401, 1731, 1794, 1847, 1855
AclWI	GGATC	4 cut(s)	62, 75, 1353, 1524
AcsI	RAATTY	3 cut(s)	444, 790, 991
AfaI	GTAC	6 cut(s)	5, 127, 134, 230, 750, 1220
AfiI	CCNNNNNNNGG	3 cut(s)	201, 1057, 1734
AflIII	ACRYGT	2 cut(s)	819, 1215
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	9 cut(s)	45, 86, 142, 265, 789, 835, 958, 1456, 1565
AjnI	CCWGG	1 cut(s)	546
Alw21I	GWGCWC	4 cut(s)	1132, 1500, 1627, 1745
Alw26I	GTCTC	4 cut(s)	179, 586, 839, 1111
AlwI	GGATC	4 cut(s)	62, 75, 1353, 1524
AlwNI	CAGNNNCTG	1 cut(s)	1897
Ama87I	CYCGRG	1 cut(s)	1487
AoxI	GGCC	2 cut(s)	346, 1076
ApeKI	GCWGC	5 cut(s)	51, 1112, 1115, 1724, 1844
ApoI	RAATTY	3 cut(s)	444, 790, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
AseI	ATTAAT	1 cut(s)	1208
AsiGI	ACCGGT	1 cut(s)	467
Asp718I	GGTACC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	168, 1135
AsuC2I	CCSGG	2 cut(s)	1488, 1489
AsuHPI	GGTGA	3 cut(s)	86, 1034, 1399
AsuNHI	GCTAGC	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	1487
AvaII	GGWCC	2 cut(s)	168, 1135
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	132
BanII	GRGCYC	4 cut(s)	1446, 1488, 1627, 1745
BauI	CACGAG	1 cut(s)	1979
BbsI	GAAGAC	1 cut(s)	1796
Bbv12I	GWGCWC	4 cut(s)	1132, 1500, 1627, 1745
BbvI	GCAGC	5 cut(s)	63, 1099, 1127, 1711, 1831
BccI	CCATC	2 cut(s)	652, 1814
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	2 cut(s)	32, 479
BclI	TGATCA	1 cut(s)	1302
BcnI	CCSGG	2 cut(s)	1488, 1489
BcoDI	GTCTC	4 cut(s)	179, 586, 839, 1111
BfaI	CTAG	6 cut(s)	539, 695, 969, 1643, 1916, 1974
BfmI	CTRYAG	1 cut(s)	1113
BfuAI	ACCTGC	2 cut(s)	498, 1787
BfuI	GTATCC	2 cut(s)	32, 479
BglII	AGATCT	2 cut(s)	976, 1875
BisI	GCNGC	7 cut(s)	52, 1113, 1116, 1401, 1725, 1845, 1856
BlpI	GCTNAGC	1 cut(s)	1445
BlsI	GCNGC	7 cut(s)	53, 1114, 1117, 1402, 1726, 1846, 1857
Bme1390I	CCNGG	3 cut(s)	548, 1488, 1489
Bme18I	GGWCC	2 cut(s)	168, 1135
BmeT110I	CYCGRG	1 cut(s)	1487
BmgT120I	GGNCC	2 cut(s)	168, 1135
BmiI	GGNNCC	4 cut(s)	59, 69, 134, 206
BmrFI	CCNGG	3 cut(s)	548, 1488, 1489
BmsI	GCATC	8 cut(s)	424, 425, 718, 1140, 1177, 1350, 1560, 1867
BmtI	GCTAGC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	1796
BpmI	CTGGAG	3 cut(s)	134, 539, 863
Bpu10I	CCTNAGC	1 cut(s)	921
Bpu1102I	GCTNAGC	1 cut(s)	1445
BpuEI	CTTGAG	1 cut(s)	1655
BpuMI	CCSGG	2 cut(s)	1488, 1489
BsaI	GGTCTC	2 cut(s)	586, 1111
BsaJI	CCNNGG	4 cut(s)	1138, 1487, 1746, 1862
BsaWI	WCCGGW	2 cut(s)	467, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 1057, 1734
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	4 cut(s)	846, 1137, 1312, 1930
Bse3DI	GCAATG	2 cut(s)	246, 1611
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	4 cut(s)	1138, 1487, 1746, 1862
BseGI	GGATG	4 cut(s)	416, 685, 1155, 1858
BseLI	CCNNNNNNNGG	3 cut(s)	201, 1057, 1734
BseMI	GCAATG	2 cut(s)	246, 1611
BseMII	CTCAG	5 cut(s)	231, 1347, 1459, 1601, 1674
BseNI	ACTGG	4 cut(s)	846, 1137, 1312, 1930
BseRI	GAGGAG	4 cut(s)	197, 781, 1735, 1794
BseXI	GCAGC	5 cut(s)	63, 1099, 1127, 1711, 1831
BshFI	GGCC	2 cut(s)	348, 1078
BshNI	GGYRCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	467
BsiHKAI	GWGCWC	4 cut(s)	1132, 1500, 1627, 1745
BsiHKCI	CYCGRG	1 cut(s)	1487
BsiSI	CCGG	3 cut(s)	468, 677, 1488
BsiWI	CGTACG	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	201, 1057, 1734
BsmAI	GTCTC	4 cut(s)	179, 586, 839, 1111
BsmI	GAATGC	2 cut(s)	1176, 1247
BsnI	GGCC	2 cut(s)	348, 1078
Bso31I	GGTCTC	2 cut(s)	586, 1111
BsoBI	CYCGRG	1 cut(s)	1487
Bsp1286I	GDGCHC	6 cut(s)	1132, 1446, 1488, 1500, 1627, 1745
Bsp1407I	TGTACA	1 cut(s)	748
Bsp1720I	GCTNAGC	1 cut(s)	1445
BspACI	CCGC	6 cut(s)	25, 1401, 1731, 1794, 1847, 1855
BspANI	GGCC	2 cut(s)	348, 1078
BspCNI	CTCAG	5 cut(s)	230, 1348, 1458, 1602, 1675
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	59, 69, 134, 206
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	2 cut(s)	498, 1787
BspOI	GCTAGC	1 cut(s)	542
BspPI	GGATC	4 cut(s)	62, 75, 1353, 1524
BspT107I	GGYRCC	1 cut(s)	132
BspTNI	GGTCTC	2 cut(s)	586, 1111
BsrBI	CCGCTC	1 cut(s)	1403
BsrDI	GCAATG	2 cut(s)	246, 1611
BsrFI	RCCGGY	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	4 cut(s)	846, 1137, 1312, 1930
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	4 cut(s)	1138, 1487, 1746, 1862
BssSI	CACGAG	1 cut(s)	1979
BssT1I	CCWWGG	2 cut(s)	1138, 1862
Bst2BI	CACGAG	1 cut(s)	1979
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	4 cut(s)	76, 452, 1273, 1288
Bst6I	CTCTTC	2 cut(s)	967, 1866
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	748
BstC8I	GCNNGC	4 cut(s)	203, 540, 544, 1729
BstDEI	CTNAG	8 cut(s)	32, 217, 612, 921, 1356, 1445, 1610, 1683
BstENI	CCTNNNNNAGG	1 cut(s)	1732
BstF5I	GGATG	4 cut(s)	416, 685, 1155, 1858
BstMAI	GTCTC	4 cut(s)	179, 586, 839, 1111
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 917, 1409, 1622, 1652
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	3 cut(s)	755, 823, 1219
BstSCI	CCNGG	3 cut(s)	546, 1486, 1487
BstSFI	CTRYAG	1 cut(s)	1113
BstV1I	GCAGC	5 cut(s)	63, 1099, 1127, 1711, 1831
BstV2I	GAAGAC	1 cut(s)	1796
BstX2I	RGATCY	5 cut(s)	67, 976, 1345, 1516, 1875
BstYI	RGATCY	5 cut(s)	67, 976, 1345, 1516, 1875
BsuI	GTATCC	2 cut(s)	32, 479
BsuRI	GGCC	2 cut(s)	348, 1078
BtsCI	GGATG	4 cut(s)	416, 685, 1155, 1858
BtsI	GCAGTG	1 cut(s)	1898
BtsIMutI	CAGTG	5 cut(s)	448, 1130, 1278, 1305, 1898
BveI	ACCTGC	2 cut(s)	498, 1787
Cac8I	GCNNGC	4 cut(s)	203, 540, 544, 1729
CaiI	CAGNNNCTG	1 cut(s)	1897
CciI	TCATGA	1 cut(s)	594
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	168, 1135
Cfr9I	CCCGGG	1 cut(s)	1487
Csp6I	GTAC	6 cut(s)	4, 126, 133, 229, 749, 1219
CspAI	ACCGGT	1 cut(s)	467
CviQI	GTAC	6 cut(s)	4, 126, 133, 229, 749, 1219
DdeI	CTNAG	8 cut(s)	32, 217, 612, 921, 1356, 1445, 1610, 1683
Eam1104I	CTCTTC	2 cut(s)	967, 1866
EarI	CTCTTC	2 cut(s)	967, 1866
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	2 cut(s)	1625, 1743
Eco130I	CCWWGG	2 cut(s)	1138, 1862
Eco147I	AGGCCT	1 cut(s)	1078
Eco24I	GRGCYC	4 cut(s)	1446, 1488, 1627, 1745
Eco31I	GGTCTC	2 cut(s)	586, 1111
Eco47I	GGWCC	2 cut(s)	168, 1135
Eco53kI	GAGCTC	2 cut(s)	1625, 1743
Eco88I	CYCGRG	1 cut(s)	1487
EcoICRI	GAGCTC	2 cut(s)	1625, 1743
EcoNI	CCTNNNNNAGG	1 cut(s)	1732
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	991
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	1138, 1862
EcoT22I	ATGCAT	3 cut(s)	757, 1155, 1192
EcoT38I	GRGCYC	4 cut(s)	1446, 1488, 1627, 1745
ErhI	CCWWGG	2 cut(s)	1138, 1862
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FauI	CCCGC	1 cut(s)	1724
FbaI	TGATCA	1 cut(s)	1302
Fnu4HI	GCNGC	7 cut(s)	52, 1113, 1116, 1401, 1725, 1845, 1856
FokI	GGATG	4 cut(s)	403, 692, 1162, 1845
FriOI	GRGCYC	4 cut(s)	1446, 1488, 1627, 1745
Fsp4HI	GCNGC	7 cut(s)	52, 1113, 1116, 1401, 1725, 1845, 1856
FspBI	CTAG	6 cut(s)	539, 695, 969, 1643, 1916, 1974
GluI	GCNGC	7 cut(s)	52, 1113, 1116, 1401, 1725, 1845, 1856
GsuI	CTGGAG	3 cut(s)	134, 539, 863
HaeIII	GGCC	2 cut(s)	348, 1078
HapII	CCGG	3 cut(s)	468, 677, 1488
HinfI	GANTC	2 cut(s)	1390, 1977
HpaII	CCGG	3 cut(s)	468, 677, 1488
HphI	GGTGA	3 cut(s)	86, 1034, 1399
Hpy166II	GTNNAC	2 cut(s)	1051, 1427
Hpy188I	TCNGA	7 cut(s)	72, 373, 413, 433, 1357, 1750, 1899
Hpy188III	TCNNGA	5 cut(s)	328, 508, 518, 595, 1343
Hpy8I	GTNNAC	2 cut(s)	1051, 1427
HpyAV	CCTTC	7 cut(s)	38, 407, 610, 1027, 1326, 1433, 1685
HpyCH4III	ACNGT	4 cut(s)	76, 452, 1273, 1288
HpyCH4IV	ACGT	1 cut(s)	1071
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 917, 1409, 1622, 1652
HpyF3I	CTNAG	8 cut(s)	32, 217, 612, 921, 1356, 1445, 1610, 1683
HpySE526I	ACGT	1 cut(s)	1071
KpnI	GGTACC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	1302
LmnI	GCTCC	7 cut(s)	57, 210, 535, 1127, 1601, 1740, 1748
Lsp1109I	GCAGC	5 cut(s)	63, 1099, 1127, 1711, 1831
LweI	GCATC	8 cut(s)	424, 425, 718, 1140, 1177, 1350, 1560, 1867
MaeI	CTAG	6 cut(s)	539, 695, 969, 1643, 1916, 1974
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	6 cut(s)	463, 477, 803, 1282, 1387, 1969
MbiI	CCGCTC	1 cut(s)	1403
MboII	GAAGA	7 cut(s)	777, 984, 1448, 1477, 1798, 1801, 1883
MfeI	CAATTG	1 cut(s)	301
MflI	RGATCY	5 cut(s)	67, 976, 1345, 1516, 1875
MhlI	GDGCHC	6 cut(s)	1132, 1446, 1488, 1500, 1627, 1745
MlyI	GAGTC	2 cut(s)	1384, 1971
MmeI	TCCRAC	1 cut(s)	95
Mph1103I	ATGCAT	3 cut(s)	757, 1155, 1192
MseI	TTAA	5 cut(s)	588, 672, 1041, 1098, 1208
MslI	CAYNNNNRTG	4 cut(s)	453, 509, 824, 1326
MspI	CCGG	3 cut(s)	468, 677, 1488
MspR9I	CCNGG	3 cut(s)	548, 1488, 1489
MunI	CAATTG	1 cut(s)	301
Mva1269I	GAATGC	2 cut(s)	1176, 1247
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	5 cut(s)	57, 917, 1409, 1622, 1652
NciI	CCSGG	2 cut(s)	1488, 1489
NheI	GCTAGC	1 cut(s)	538
NlaIV	GGNNCC	4 cut(s)	59, 69, 134, 206
NmuCI	GTSAC	3 cut(s)	477, 1282, 1387
NsiI	ATGCAT	3 cut(s)	757, 1155, 1192
NspI	RCATGY	3 cut(s)	755, 823, 1219
PagI	TCATGA	1 cut(s)	594
PceI	AGGCCT	1 cut(s)	1078
PciI	ACATGT	2 cut(s)	819, 1215
PctI	GAATGC	2 cut(s)	1176, 1247
Pfl23II	CGTACG	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	1057
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	7 cut(s)	53, 1114, 1117, 1402, 1726, 1846, 1857
PleI	GAGTC	2 cut(s)	1384, 1971
PpsI	GAGTC	2 cut(s)	1384, 1971
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	2 cut(s)	819, 1215
PshBI	ATTAAT	1 cut(s)	1208
Psp124BI	GAGCTC	2 cut(s)	1627, 1745
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspLI	CGTACG	1 cut(s)	125
PspN4I	GGNNCC	4 cut(s)	59, 69, 134, 206
PspPI	GGNCC	2 cut(s)	168, 1135
PspPPI	RGGWCCY	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	815, 847
PstI	CTGCAG	1 cut(s)	1117
PstNI	CAGNNNCTG	1 cut(s)	1897
PsuI	RGATCY	5 cut(s)	67, 976, 1345, 1516, 1875
RsaI	GTAC	6 cut(s)	5, 127, 134, 230, 750, 1220
RsaNI	GTAC	6 cut(s)	4, 126, 133, 229, 749, 1219
RseI	CAYNNNNRTG	4 cut(s)	453, 509, 824, 1326
SacI	GAGCTC	2 cut(s)	1627, 1745
SaqAI	TTAA	5 cut(s)	588, 672, 1041, 1098, 1208
SatI	GCNGC	7 cut(s)	52, 1113, 1116, 1401, 1725, 1845, 1856
Sau96I	GGNCC	2 cut(s)	168, 1135
SchI	GAGTC	2 cut(s)	1384, 1971
ScrFI	CCNGG	3 cut(s)	548, 1488, 1489
SduI	GDGCHC	6 cut(s)	1132, 1446, 1488, 1500, 1627, 1745
SfaNI	GCATC	8 cut(s)	424, 425, 718, 1140, 1177, 1350, 1560, 1867
SfcI	CTRYAG	1 cut(s)	1113
SinI	GGWCC	2 cut(s)	168, 1135
SmaI	CCCGGG	1 cut(s)	1489
SmiMI	CAYNNNNRTG	4 cut(s)	453, 509, 824, 1326
SmlI	CTYRAG	1 cut(s)	1670
SmoI	CTYRAG	1 cut(s)	1670
SseBI	AGGCCT	1 cut(s)	1078
SsiI	CCGC	6 cut(s)	25, 1401, 1731, 1794, 1847, 1855
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	6 cut(s)	539, 695, 969, 1643, 1916, 1974
SstI	GAGCTC	2 cut(s)	1627, 1745
StuI	AGGCCT	1 cut(s)	1078
StyD4I	CCNGG	3 cut(s)	546, 1486, 1487
StyI	CCWWGG	2 cut(s)	1138, 1862
TaaI	ACNGT	4 cut(s)	76, 452, 1273, 1288
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	4 cut(s)	329, 733, 1528, 1588
TaqII	GACCGA	1 cut(s)	170
TatI	WGTACW	2 cut(s)	748, 1218
TauI	GCSGC	2 cut(s)	1403, 1858
Tru1I	TTAA	5 cut(s)	588, 672, 1041, 1098, 1208
Tru9I	TTAA	5 cut(s)	588, 672, 1041, 1098, 1208
TscAI	CASTG	5 cut(s)	455, 1137, 1278, 1312, 1898
TseFI	GTSAC	3 cut(s)	477, 1282, 1387
TseI	GCWGC	5 cut(s)	51, 1112, 1115, 1724, 1844
Tsp45I	GTSAC	3 cut(s)	477, 1282, 1387
TspDTI	ATGAA	5 cut(s)	666, 1193, 1310, 1478, 1925
TspMI	CCCGGG	1 cut(s)	1487
TspRI	CASTG	5 cut(s)	455, 1137, 1278, 1312, 1898
Van91I	CCANNNNNTGG	1 cut(s)	1057
VpaK11BI	GGWCC	2 cut(s)	168, 1135
VspI	ATTAAT	1 cut(s)	1208
XagI	CCTNNNNNAGG	1 cut(s)	1732
XapI	RAATTY	3 cut(s)	444, 790, 991
XceI	RCATGY	3 cut(s)	755, 823, 1219
XmaI	CCCGGG	1 cut(s)	1487
XspI	CTAG	6 cut(s)	539, 695, 969, 1643, 1916, 1974
Zsp2I	ATGCAT	3 cut(s)	757, 1155, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.