pycom05g14230

Chloride channel protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
17747579 .. 17747893
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGTTGGTATTTGTTGACAATCTTCACAAGACCGTTGGCCTACCAAAATTTTTGTTCCCTATCGTGGGTGGCTTGGCTATTGGGCTGATGGCATTGGTATATCCTGAAATTCTTTATCGGGGTTTCGAGAATGTTGACATTTTTCTGGAATCTCGACCACTTGAGAAAGGCCTCCCAGCTGATCTGTTTCTTCAGTTGGTAGTGGTCAAGATAGCTGATCTGTTTCTGCAGCAACAGGAATGGCATCGGCAAAAACATCGGTTCTGCAGTTGCTCAGTCCAATCCTATACTTCATCTTTCTGTCTTTGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

7.74

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020396)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 47, 108
AcuI CTGAAG 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 64, 65
AluBI AGCT 2 cut(s) 179, 215
AluI AGCT 2 cut(s) 179, 215
AoxI GGCC 2 cut(s) 37, 169
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 2 cut(s) 47, 108
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BfmI CTRYAG 2 cut(s) 227, 265
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmsI GCATC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 65
BseLI CCNNNNNNNGG 2 cut(s) 64, 65
BseMII CTCAG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 2 cut(s) 39, 171
BslI CCNNNNNNNGG 2 cut(s) 64, 65
BsnI GGCC 2 cut(s) 39, 171
Bsp143I GATC 2 cut(s) 181, 217
BspANI GGCC 2 cut(s) 39, 171
BspCNI CTCAG 1 cut(s) 287
BspMAI CTGCAG 2 cut(s) 231, 269
BssMI GATC 2 cut(s) 181, 217
Bst4CI ACNGT 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 274
BstKTI GATC 2 cut(s) 184, 220
BstMBI GATC 2 cut(s) 181, 217
BstSFI CTRYAG 2 cut(s) 227, 265
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 39, 171
CviJI RGCY 7 cut(s) 39, 72, 77, 85, 171, 179, 215
CviKI_1 RGCY 7 cut(s) 39, 72, 77, 85, 171, 179, 215
DdeI CTNAG 1 cut(s) 274
DpnI GATC 2 cut(s) 183, 219
DpnII GATC 2 cut(s) 181, 217
Eco147I AGGCCT 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 176
FaiI YATR 2 cut(s) 100, 288
Fnu4HI GCNGC 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 230
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 39, 171
HincII GTYRAC 2 cut(s) 16, 136
HindII GTYRAC 2 cut(s) 16, 136
HinfI GANTC 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 16, 136
Hpy188III TCNNGA 5 cut(s) 104, 127, 146, 153, 208
Hpy8I GTNNAC 2 cut(s) 16, 136
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 229, 267
HpyF3I CTNAG 1 cut(s) 274
Kzo9I GATC 2 cut(s) 181, 217
LpnPI CCDG 4 cut(s) 117, 131, 189, 221
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 253
MalI GATC 2 cut(s) 183, 219
MboI GATC 2 cut(s) 181, 217
MboII GAAGA 2 cut(s) 14, 182
MluCI AATT 2 cut(s) 47, 108
MnlI CCTC 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 179
NdeII GATC 2 cut(s) 181, 217
PceI AGGCCT 1 cut(s) 171
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 175
PstI CTGCAG 2 cut(s) 231, 269
PvuII CAGCTG 1 cut(s) 179
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 2 cut(s) 181, 217
SetI ASST 2 cut(s) 181, 217
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 2 cut(s) 227, 265
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 47, 108
SseBI AGGCCT 1 cut(s) 171
StuI AGGCCT 1 cut(s) 171
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 126, 154
TasI AATT 2 cut(s) 47, 108
TfiI GAWTC 1 cut(s) 149
TseI GCWGC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 282
XapI RAATTY 2 cut(s) 47, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.