pycom05g16650

Alcohol dehydrogenase GroES-like domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
19926293 .. 19928392
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGACGGATGGTGGAGTTGACAGAAGCTTAGAGTGCACCGGGAACATTAATTCGATGATCTCCGCTTTCGAATGTGTTCATGATGTATGCTTAATTTTTATATTAACAGAAGGGTGGGGTGTAGCGGTGCTTGTAGGAGTGCCAACCAAGGATGCAATCTTCAAGACAAACCCCATGAAAGTACTTGATGAAAGAACCCTCAAAGGAACAATTTTCGGCAACTACAAGCCTCGGAGCGACCTTCCCTCTCTCGTGGACATGTACATGAACAAGAAACTGGAAGTAGAGAAGTTTATAACGCATCGACTTCCTTTCTCGGAGATCAACAGAGCTTTTGACCTAATGTTGAAGGGGGAAGGCTTGCGGTGCGTCATTAGCATGGAAGAGGTTTTCTTTCTTTTTTCTTTTTTTTTTAATTGTCATGTCACCATAGAAAATGGAACTCTAATACCACCTACGAGAAAATTACTAAATTGCCCTTCCACATTAACATATTTAACGAAAAGGACAGATTTCAACCAAAGTGGAGCGAATATTGAGTTCCCGGGTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

6.3

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022540)

Species Orthologous Gene IDs
pyrus_communis pycom05g16650
rosa_multiflora Rmu_co8055068.1_g000001 Rmu_sc0000469.1_g000030
rosa_roxburghii Rroxscaffold_7G00191480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AciI CCGC 3 cut(s) 63, 125, 364
AfaI GTAC 2 cut(s) 183, 263
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 163, 349, 517
AluBI AGCT 2 cut(s) 27, 332
AluI AGCT 2 cut(s) 27, 332
Alw21I GWGCWC 1 cut(s) 38
Alw44I GTGCAC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 544
ApaLI GTGCAC 1 cut(s) 34
AseI ATTAAT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 75
AsuC2I CCSGG 3 cut(s) 40, 545, 546
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 38
BauI CACGAG 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 1 cut(s) 2
BcnI CCSGG 3 cut(s) 40, 545, 546
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 3 cut(s) 40, 545, 546
BmeT110I CYCGRG 1 cut(s) 544
BmrFI CCNGG 3 cut(s) 40, 545, 546
BmsI GCATC 2 cut(s) 142, 310
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 3 cut(s) 40, 545, 546
BsaJI CCNNGG 3 cut(s) 147, 230, 544
Bse1I ACTGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 147, 230, 544
BseGI GGATG 2 cut(s) 13, 157
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 2 cut(s) 39, 545
BsoBI CYCGRG 1 cut(s) 544
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 2 cut(s) 57, 321
BspACI CCGC 3 cut(s) 63, 125, 364
BspHI TCATGA 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 261
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 3 cut(s) 147, 230, 544
BssMI GATC 2 cut(s) 57, 321
BssSI CACGAG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 378
BstAUI TGTACA 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 13, 157
BstKTI GATC 2 cut(s) 60, 324
BstMBI GATC 2 cut(s) 57, 321
BstMWI GCNNNNNNNGC 3 cut(s) 33, 366, 375
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 3 cut(s) 38, 543, 544
BstSLI GKGCMC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 13, 157
Cac8I GCNNGC 1 cut(s) 362
CciI TCATGA 1 cut(s) 79
Cfr9I CCCGGG 1 cut(s) 544
CseI GACGC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 182, 262
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 6 cut(s) 80, 175, 259, 265, 379, 422
CviJI RGCY 4 cut(s) 27, 229, 332, 360
CviKI_1 RGCY 4 cut(s) 27, 229, 332, 360
CviQI GTAC 2 cut(s) 182, 262
DdeI CTNAG 1 cut(s) 28
DpnI GATC 2 cut(s) 59, 323
DpnII GATC 2 cut(s) 57, 321
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 6 cut(s) 83, 178, 262, 268, 382, 425
FatI CATG 6 cut(s) 79, 174, 258, 264, 378, 421
FokI GGATG 2 cut(s) 20, 164
HapII CCGG 2 cut(s) 39, 545
HgaI GACGC 1 cut(s) 358
Hin1II CATG 6 cut(s) 83, 178, 262, 268, 382, 425
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 25
HpaII CCGG 2 cut(s) 39, 545
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 3 cut(s) 19, 36, 256
Hpy188I TCNGA 2 cut(s) 234, 319
Hpy188III TCNNGA 2 cut(s) 80, 163
Hpy8I GTNNAC 3 cut(s) 19, 36, 256
HpyAV CCTTC 5 cut(s) 104, 251, 343, 350, 489
HpyCH4V TGCA 2 cut(s) 36, 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 366, 375
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 6 cut(s) 83, 178, 262, 268, 382, 425
Kzo9I GATC 2 cut(s) 57, 321
LmnI GCTCC 2 cut(s) 234, 527
LpnPI CCDG 2 cut(s) 52, 263
LweI GCATC 2 cut(s) 142, 310
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 59, 323
MboI GATC 2 cut(s) 57, 321
MboII GAAGA 2 cut(s) 151, 395
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 6 cut(s) 49, 93, 210, 415, 464, 472
MnlI CCTC 4 cut(s) 209, 240, 256, 379
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 6 cut(s) 48, 92, 104, 414, 488, 497
MslI CAYNNNNRTG 2 cut(s) 263, 377
MspI CCGG 2 cut(s) 39, 545
MspR9I CCNGG 3 cut(s) 40, 545, 546
MwoI GCNNNNNNNGC 3 cut(s) 33, 366, 375
NciI CCSGG 3 cut(s) 40, 545, 546
NdeII GATC 2 cut(s) 57, 321
NlaIII CATG 6 cut(s) 83, 178, 262, 268, 382, 425
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 79
PciI ACATGT 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 75
PscI ACATGT 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 48
PsiI TTATAA 1 cut(s) 296
RsaI GTAC 2 cut(s) 183, 263
RsaNI GTAC 2 cut(s) 182, 262
RseI CAYNNNNRTG 2 cut(s) 263, 377
SaqAI TTAA 6 cut(s) 48, 92, 104, 414, 488, 497
Sau3AI GATC 2 cut(s) 57, 321
ScaI AGTACT 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 40, 545, 546
SduI GDGCHC 1 cut(s) 38
SetI ASST 6 cut(s) 29, 243, 334, 342, 390, 457
SfaNI GCATC 2 cut(s) 142, 310
SfuI TTCGAA 1 cut(s) 69
SmaI CCCGGG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 263, 377
Sse9I AATT 6 cut(s) 49, 93, 210, 415, 464, 472
SsiI CCGC 3 cut(s) 63, 125, 364
SspI AATATT 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 38, 543, 544
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 3 cut(s) 53, 69, 304
TasI AATT 6 cut(s) 49, 93, 210, 415, 464, 472
TatI WGTACW 2 cut(s) 181, 261
Tru1I TTAA 6 cut(s) 48, 92, 104, 414, 488, 497
Tru9I TTAA 6 cut(s) 48, 92, 104, 414, 488, 497
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 4 cut(s) 68, 191, 204, 281
TspGWI ACGGA 1 cut(s) 20
TspMI CCCGGG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 34
VspI ATTAAT 1 cut(s) 48
XceI RCATGY 1 cut(s) 262
XmaI CCCGGG 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.