Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8055068.1

Orthogroup ID

OG0022540

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 317

Gene Structure 317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8055068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 220 bp

atgaccaatggtggagttgataggagtgttgagtgcactggaagcatccaggctatgatctctgcttttgaatgtgttcatgatggttggggggttgctgtacttgttggagtgccaaacaaagacgatgcattcaaaacccatccgataaacttcttgaatgagaggactctgaaggggactttctatggtaactacaagccccgcaccgatctacctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

73

Amino Acids

7.99

Weight (kDa)

6.01

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022540)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g16650
rosa_multiflora	Rmu_co8055068.1_g000001 Rmu_sc0000469.1_g000030
rosa_roxburghii	Rroxscaffold_7G00191480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	71, 136, 160
AjnI	CCWGG	1 cut(s)	48
Alw21I	GWGCWC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	34
ApaLI	GTGCAC	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	2 cut(s)	77, 150
BciT130I	CCWGG	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	54, 118
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	45, 142
BseNI	ACTGG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	57, 211
BspACI	CCGC	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	57, 211
Bst2UI	CCWGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	45, 142
BstKTI	GATC	2 cut(s)	60, 214
BstMBI	GATC	2 cut(s)	57, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	45, 142
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	2 cut(s)	53, 202
CviKI_1	RGCY	2 cut(s)	53, 202
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	2 cut(s)	59, 213
DpnII	GATC	2 cut(s)	57, 211
Eco57I	CTGAAG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	56, 81, 189
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	212
FokI	GGATG	2 cut(s)	32, 129
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	147, 174
Hpy188III	TCNNGA	2 cut(s)	80, 157
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	36, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	57, 211
LpnPI	CCDG	3 cut(s)	24, 35, 62
LweI	GCATC	2 cut(s)	54, 118
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	59, 213
MboI	GATC	2 cut(s)	57, 211
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	2 cut(s)	57, 211
NlaIII	CATG	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	133
PagI	TCATGA	1 cut(s)	79
PctI	GAATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	57, 211
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	54, 118
SgeI	CNNG	8 cut(s)	51, 61, 62, 92, 116, 169, 211, 216
SsiI	CCGC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	48
TatI	WGTACW	1 cut(s)	100
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.