Rroxscaffold_7G00191480

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
32072448 .. 32074608
2161 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00191480.1

Sequence Viewer

Length: 330 bp
ATGCCTTATAATCCTCTACATAAAGAGGCCCCTATTATCAATGAGATATACACAGCGATTTTCTCTCAATTTCGATTCCCTAAAACAGCCTCCTATATATATGGTTGGGGGGTTGATGTACTTGTTGGATTGCCAAACAAAGACGATGCGTTCAAAACCCATCCAATGAACTTCTTGAATGAGAAGACTCTTACGGGTACATTCTATGGTAACCACAAGCCCCGCACTGATCTACCTAGTGTTGTGGAGAAATATATGAACAAGGGAATCACACTTTTTTCAGCCCCCATTCTAGCAACCCGCTTCATGAAGGCTCTGATGGGTTCTTAG

Protein Analysis

109

Amino Acids

12.38

Weight (kDa)

9.4

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022540)

Species Orthologous Gene IDs
pyrus_communis pycom05g16650
rosa_multiflora Rmu_co8055068.1_g000001 Rmu_sc0000469.1_g000030
rosa_roxburghii Rroxscaffold_7G00191480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AciI CCGC 2 cut(s) 223, 301
AfaI GTAC 2 cut(s) 120, 199
AgsI TTSAA 2 cut(s) 154, 178
AoxI GGCC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 191
BccI CCATC 2 cut(s) 168, 313
BfaI CTAG 2 cut(s) 237, 293
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 191
BseGI GGATG 1 cut(s) 160
BshFI GGCC 1 cut(s) 29
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 2 cut(s) 223, 301
BspANI GGCC 1 cut(s) 29
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 30
BssMI GATC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 327
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 225
CciI TCATGA 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 119, 198
CviAII CATG 1 cut(s) 307
CviJI RGCY 5 cut(s) 29, 89, 220, 284, 314
CviKI_1 RGCY 5 cut(s) 29, 89, 220, 284, 314
CviQI GTAC 2 cut(s) 119, 198
DdeI CTNAG 1 cut(s) 327
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 209
FaeI CATG 1 cut(s) 310
FatI CATG 1 cut(s) 306
FauI CCCGC 2 cut(s) 230, 308
FokI GGATG 1 cut(s) 147
FspBI CTAG 2 cut(s) 237, 293
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 1 cut(s) 310
HinfI GANTC 3 cut(s) 75, 187, 267
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 2 cut(s) 175, 307
HpyAV CCTTC 1 cut(s) 304
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 1 cut(s) 310
Kzo9I GATC 1 cut(s) 229
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 237, 293
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 196
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 19, 24, 100
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 30
PagI TCATGA 1 cut(s) 306
PfeI GAWTC 2 cut(s) 75, 267
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PsiI TTATAA 1 cut(s) 9
PspEI GGTNACC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 28
RsaI GTAC 2 cut(s) 120, 199
RsaNI GTAC 2 cut(s) 119, 198
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 181
SetI ASST 1 cut(s) 238
SfaNI GCATC 1 cut(s) 136
Sse9I AATT 1 cut(s) 68
SsiI CCGC 2 cut(s) 223, 301
SspMI CTAG 2 cut(s) 237, 293
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 68
TatI WGTACW 1 cut(s) 118
TfiI GAWTC 2 cut(s) 75, 267
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 182, 272, 295, 323
TspRI CASTG 1 cut(s) 232
XspI CTAG 2 cut(s) 237, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.